getNextLeftFocal: Expand the neighborhood to the left
In perfectphyloR: Reconstruct Perfect Phylogenies from DNA Sequence Data
Description
Usage
Arguments
Value
See Also
Examples
View source: R/find_SNV_utility_functions.R
Description
This function tries to expand the neighborhood to the left, when the next SNV
from getNextFromFocal is incompatible with each SNV in
the neighborhood of the focal SNV, and this incompatible SNV is to the
right of the neighborhood.
Usage
1
getNextLeftFocal(current, absDist)
Arguments
current
Current SNVs in the neighborhood of focal SNV.
absDist
Absolute distance of SNVs from the focal SNV in base pairs.
Value
An index of a SNV to the left of the neighborhood to be returned to findSNVs.
See Also
Examples
1
perfectphyloR documentation built on March 8, 2021, 9:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also Examples
View source: R/find_SNV_utility_functions.R
Description
This function tries to expand the neighborhood to the left, when the next SNV
from getNextFromFocal is incompatible with each SNV in
the neighborhood of the focal SNV, and this incompatible SNV is to the
right of the neighborhood.
Usage
1 | getNextLeftFocal(current, absDist)
|
Arguments
current |
Current SNVs in the neighborhood of focal SNV. |
absDist |
Absolute distance of SNVs from the focal SNV in base pairs. |
Value
An index of a SNV to the left of the neighborhood to be returned to findSNVs.
See Also
Examples
1 |
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.