Tagloss_format: Format a CMR dataset into a file that Tagloss_L can use.

In phenology: Tools to Manage a Parametric Function that Describes Phenology and More

Format a CMR dataset into a file that Tagloss_L can use.

Description

This function formats a CMR dataset to a file that Tagloss_L can use.
The format of data is a data.frame with 4 columns:
ID is the column with the permanent identification code
L is the column with the non-permanent code located at left
R is the column with the non-permanent code located at right
Date is the column with the date of observation
Note that R and L columns can be exchanged if 21 model is used.

Usage

Tagloss_format(
  data,
  model = "21",
  progressbar = TRUE,
  column.Date = "Date",
  column.ID = "ID",
  column.left = "L",
  column.right = "R",
  keeponly2 = TRUE
)

Arguments

data	CMR file
model	Can be "21" or "LR"
progressbar	Is a progressbar been shown?
column.Date	Name of the column with Date
column.ID	Name of the column with ID
column.left	Name of the column with left tag
column.right	Name of the column with right tag
keeponly2	If TRUE, keep only individuals tagged with 2 tags

Details

Tagloss_format formats a CMR dataset into a file that Tagloss_L can use.

Value

Return the maximum number of days an individual has been observed in a dataset.

Author(s)

Marc Girondot

See Also

Other Model of Tag-loss: Tagloss_L(), Tagloss_LengthObs(), Tagloss_cumul(), Tagloss_daymax(), Tagloss_fit(), Tagloss_mcmc(), Tagloss_mcmc_p(), Tagloss_model(), Tagloss_simulate(), logLik.Tagloss(), o_4p_p1p2, plot.Tagloss(), plot.TaglossData()

Examples

## Not run: 
library(phenology)
# Example
head(outLR)
data_f_21 <- Tagloss_format(outLR, model="21")
data_f_LR <- Tagloss_format(outLR, model="LR")

## End(Not run)

phenology documentation built on June 17, 2025, 9:08 a.m.