Global functions | |
---|---|
BNPR | Man page Source code |
BNPR_PS | Man page Source code |
Bottle_20c | Man page |
ESS | Source code |
ESS_betas_ll | Source code |
ESS_ext_ll | Source code |
ESS_none_ll | Source code |
ESS_old | Source code |
ESS_wrapper | Source code |
GP.posterior | Source code |
GP.posterior2 | Source code |
GP.prior | Source code |
HMC | Source code |
MALA | Source code |
MH_betas | Source code |
MH_betas_rscan | Source code |
Met | Source code |
NY_flu | Man page |
Q.matrix | Source code |
Q_matrix | Source code |
U | Source code |
U_kappa | Source code |
U_split | Source code |
U_split_smc | Source code |
aMALA | Source code |
bias | Source code |
boombust_traj | Man page Source code |
boombust_traj_inv | Source code |
bottleneck_traj | Man page Source code |
bottleneck_traj_inv | Source code |
branching_sampling_times | Source code |
bring_branch_lengths | Source code |
burnin_subsample | Source code |
calculate_estimates | Source code |
coal_check | Source code |
coal_lik_init | Source code |
coal_loglik | Source code |
coal_loglik_smc | Source code |
coal_samp_fns_loglik | Source code |
coal_samp_loglik | Source code |
coal_stats | Source code |
coal_to_exp | Source code |
coalsim | Man page Source code |
coalsim_thin | Source code |
coalsim_tt | Source code |
compute_pos_summ | Source code |
condense_stats | Source code |
create_F | Man page Source code |
cyclic_traj | Man page Source code |
cyclic_traj_inv | Source code |
dev | Source code |
envelope | Source code |
exp_coal_lik_init | Source code |
exp_coal_loglik | Source code |
exp_to_KS | Source code |
exp_traj | Man page Source code |
exp_traj_inv | Source code |
find.children.length | Source code |
find_info2 | Man page Source code |
find_sufficient | Source code |
float2gray | Source code |
gen_INLA_args | Source code |
gen_summary | Source code |
generate_newick | Man page Source code |
generate_newick_old | Source code |
get_data | Source code |
gp_nieps_iso | Source code |
group_data | Source code |
group_sufficient | Source code |
hazard_uniroot_stepfun | Source code |
heterochronous_gp_stat | Source code |
heterochronous_gp_stat_old | Source code |
hist2heat | Man page Source code |
infer_coal | Source code |
infer_coal_deriv | Source code |
infer_coal_samp | Source code |
infer_coal_samp_exper | Source code |
infer_samp | Source code |
infer_samp_exper | Source code |
inla.models | Man page Source code |
int_invexp_interval | Source code |
integrate_step_fun | Source code |
joint_stats | Source code |
lambda.prior | Source code |
lambda_prior | Source code |
location.thinned.uniform | Source code |
location.thinned.uniform2 | Source code |
log_betas_prior | Source code |
log_f_prior_kappa | Source code |
log_kappa_prior | Source code |
log_mvnorm_prior | Source code |
log_tau_prior | Source code |
logistic_traj | Man page Source code |
logistic_traj_inv | Source code |
mcmc_sampling | Man page Source code |
mesa_traj | Man page Source code |
mesa_traj_inv | Source code |
ml_exp_coal | Man page Source code |
number.thinned | Source code |
phylodyn | Man page |
phylodyn-package | Man page |
plot_BNPR | Man page Source code |
plot_BNPR_old | Source code |
plot_INLA | Source code |
plot_INLA_ii | Source code |
plot_INLA_inv | Source code |
plot_MCMC | Source code |
plot_mrw | Man page Source code |
plot_res | Man page Source code |
plot_seasonality | Man page Source code |
posterior_coal_check | Man page Source code |
posterior_samp_check | Man page Source code |
precBM | Source code |
pref_sample | Man page Source code |
read_times | Man page Source code |
regional_flu | Man page |
relwid | Source code |
relwid_emp | Source code |
samp_check | Source code |
samp_loglik | Source code |
samp_stats | Source code |
samp_to_exp | Source code |
sampling | Source code |
sampling_ESS | Source code |
shade_band | Source code |
sigmoidal | Source code |
slice.sampling | Source code |
sloped_traj | Man page Source code |
sloped_traj_inv | Source code |
smcp_sampling | Man page Source code |
splitHMC | Source code |
steep_cyc_traj | Man page Source code |
steep_cyc_traj_inv | Source code |
sufficient_stats | Source code |
sufficient_stats2 | Source code |
summarize_phylo | Man page Source code |
traj_beta | Man page Source code |
unif_traj | Man page Source code |
unif_traj_inv | Source code |
update_burnin_subsample | Source code |
variation | Source code |
whiten_kappa | Source code |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.