Files in phylodyn
Statistical Tools for Phylodynamics
inst
inst/doc
inst/doc/Simulation.html
inst/doc/RegionalInfluenza.R
inst/doc/RegionalInfluenza.html
inst/doc/RegionalInfluenza.Rmd
inst/doc/SimplePhyloinfer.html
inst/doc/NewYorkInfluenza.html
inst/doc/LocalGenealogies.html
inst/doc/RegionalSeasonality.R
inst/doc/LocalGenealogies.R
inst/doc/RegionalSeasonality.Rmd
inst/doc/SimplePhyloinfer.Rmd
inst/doc/LocalGenealogies.Rmd
inst/doc/LongPhyloinfer.Rmd
inst/doc/NewYorkInfluenza.Rmd
inst/doc/LongPhyloinfer.html
inst/doc/Simulation.R
inst/doc/RegionalSeasonality.html
inst/doc/SimplePhyloinfer.R
inst/doc/SimpleBNPR.html
inst/doc/NewYorkInfluenza.R
inst/doc/SimpleBNPR.R
inst/doc/LongPhyloinfer.R
inst/doc/SimpleBNPR.Rmd
inst/doc/Simulation.Rmd
tests
tests/testthat.R
tests/testthat
tests/testthat/test_anything.R
NAMESPACE
data
data/regional_flu.rda
data/NY_flu.rda
data/Bottle_20c.rda
R
R/read_newick.R
R/performance_measures.R
R/Phyloinfer.R
R/model_check.R
R/plotting_tools.R
R/INLA_tools.R
R/hist2heat.R
R/wrappers.R
R/trajectories.R
R/simple_models.R
R/old_functions.R
R/statgentools.R
R/calculate.R
R/GP_isochronous.R
R/Tajima.R
R/phylodyn.R
R/coal_lik.R
R/gp_nieps.R
R/datasets.R
R/coal_lik_BSMC.R
R/Newick_Files.R
R/coalsieve.R
vignettes
vignettes/RegionalInfluenza.Rmd
vignettes/RegionalSeasonality.Rmd
vignettes/SimplePhyloinfer.Rmd
vignettes/LocalGenealogies.Rmd
vignettes/LongPhyloinfer.Rmd
vignettes/NewYorkInfluenza.Rmd
vignettes/SimpleBNPR.Rmd
vignettes/Simulation.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/read_times.Rd
man/ml_exp_coal.Rd
man/pref_sample.Rd
man/sloped_traj.Rd
man/regional_flu.Rd
man/bottleneck_traj.Rd
man/posterior_coal_check.Rd
man/phylodyn-package.Rd
man/traj_beta.Rd
man/summarize_phylo.Rd
man/Bottle_20c.Rd
man/mcmc_sampling.Rd
man/exp_traj.Rd
man/logistic_traj.Rd
man/cyclic_traj.Rd
man/steep_cyc_traj.Rd
man/BNPR.Rd
man/find_info2.Rd
man/NY_flu.Rd
man/boombust_traj.Rd
man/create_F.Rd
man/hist2heat.Rd
man/plot_BNPR.Rd
man/mesa_traj.Rd
man/smcp_sampling.Rd
man/posterior_samp_check.Rd
man/plot_seasonality.Rd
man/inla.models.Rd
man/generate_newick.Rd
man/plot_mrw.Rd
man/unif_traj.Rd
man/coalsim.Rd
man/plot_res.Rd
