phylter: Detect and Remove Outliers in Phylogenomics Datasets

Analyzis and filtering of phylogenomics datasets. It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify what species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) <doi:10.1101/2021.09.08.459421>), a generalization of classical multidimensional scaling to multiple distance matrices.

Package details

AuthorDamien M. de Vienne [aut], Stéphane Dray [aut], Théo Tricou [aut], Aurélie Siberchicot [aut, cre]
MaintainerAurélie Siberchicot <>
LicenseGPL (>= 2)
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the phylter package in your browser

Any scripts or data that you put into this service are public.

phylter documentation built on Aug. 24, 2023, 9:10 a.m.