write.phylter: Write summary of phyter analysis to file(s)

In phylter: Detect and Remove Outliers in Phylogenomics Datasets

Write summary of phyter analysis to file(s)

Description

Write the summary of the phylter analysis in a txt file or as a pdf report.

Usage

write.phylter(
  x,
  file = "",
  include.discarded = TRUE,
  pdfreport = FALSE,
  pdfreport.file = "report.pdf"
)

Arguments

x	The object returned by the 'phylter()' function.
file	Name of the file where to write the text summary of the phylter output. If "" (the default), write.phylyer() prints to the standard output.
include.discarded	Logical. If TRUE (the default) the elements discarded before the analysis are still in the list of Outliers in the output. Useful for cleaning datasets after a phylter analysis.
pdfreport	Logical. Should a full report of the phylter analysis
pdfreport.file	If report=TRUE, name of the pdf file where the report is written. Default to report.pdf

Value

No return value

Examples

data(carnivora) 
res <- phylter(carnivora, parallel = FALSE)
# write a full report to the standard output
write.phylter(res) 

phylter documentation built on Aug. 24, 2023, 9:10 a.m.