Dist2WR: Compute gene x species matrix from the result of Distatis
In phylter: Detect and Remove Outliers in Phylogenomics Datasets

Dist2WR

R Documentation

Compute gene x species matrix from the result of Distatis

Description

Dist2WR computes the 2WR matrix from the results obtaind with DistatisFast (the fast version of distatis). For internal use mostly.

Usage

Dist2WR(Distatis)

Arguments

Distatis

output of the fonction DistatisFast.

Value

A matrix (gene=rows x species=col). Each cell represents a gene/species pair, whose value represents the distance between (i) the position of this species in this gene tree and (ii) the average position of this species in all other gene trees.

Examples

data(carnivora)
matrices<-phylter(carnivora, InitialOnly=TRUE, parallel=FALSE)$matrices
ds<-DistatisFast(matrices, parallel = FALSE)
WR<-Dist2WR(ds) #returns the gene x species matrix

phylter documentation built on Aug. 24, 2023, 9:10 a.m.