Man pages for phylter
Detect and Remove Outliers in Phylogenomics Datasets
| carnivora | 125 genes trees for 53 carnivora species |
| detect.outliers | Detection of outliers in 1D and 2D data |
| Dist2WR | Compute gene x species matrix from the result of Distatis |
| DistatisFast | Fast implementation the multivariate analysis method Distatis |
| impMean | Imputation of missing values in a collection of matrices |
| medcouple | A robust measure of skewness for univariate data |
| normalize | Median normalization of 2D matrix by row or by colomn |
| phylter | Filter phylogenomics datasets |
| plot.phylter | Plot phylter objects |
| PreparePhylterData | Prepare data for phylter analysis |
| print.phylter | Print phylter objects |
| print.phylterfinal | print objects of class phylterfinal |
| print.phylterinitial | print objects of class phylterinitial |
| print.summary.phylter | print summary of phylter objects |
| rename.genes | Name or rename a list of gene trees or matrices |
| simtrees | Simplistic simulation of gene trees with outliers |
| summary.phylter | Get summary for phylter objects |
| trees2matrices | Convert phylogenetic trees to distance matrices |
| write.phylter | Write summary of phyter analysis to file(s) |
