Man pages for piglet
Program for Inferring Immunoglobulin Allele Similarity Clusters and Genotypes
| alleleClusterNames | Allele similarity cluster naming scheme |
| allele_cluster_table | Allele similarity cluster table |
| allele_diff | Alleles nucleotide position difference |
| allele_diff_indices | Calculate differences between characters in columns of germs... |
| allele_diff_indices_parallel | Calculate SNPs or their count for each germline-input... |
| allele_diff_indices_parallel2 | Calculate SNPs or their count for each germline-input... |
| allele_diff_strings | Calculate differences between characters in columns of germs... |
| allele_threshold_table | Allele thresholds table |
| artificialFRW1Germline | FWR1 artificial dataset generator |
| assignAlleleClusters | Assign allele similarity clusters |
| extractASCTable | Extracts the allele cluster table from the archive file. |
| generateReferenceSet | Generate allele similarity reference set |
| germlineASC | Converts IGHV germline set to ASC germline set. |
| GermlineCluster-class | Output of inferAlleleClusters |
| hv_functionality | Human IGHV germlines functionality description |
| HVGERM | Human IGHV germlines |
| ighvClust | Allele similarity clustering |
| ighvDistance | Germline set alleles distance |
| inferAlleleClusters | Allele similarity cluster |
| inferGenotypeAllele | Allele based genotype inference |
| inferGenotypeAllele_asc | Allele similarity cluster based genotype inference Testing... |
| insert_gaps2_vec | Insert gaps into an ungapped sequence based on a gapped... |
| piglet | The Program for Ig clusters (PIgLET) package |
| piglet-package | piglet: Program for Inferring Immunoglobulin Allele... |
| pipe | Pipe operator |
| plotAlleleCluster | Plotting the dendrogram of the clusters |
| recentAlleleClusters | Retrieving allele similarity clusters Zenodo archive |
| zenodoArchive | zenodoArchive |
