germlineASC: Converts IGHV germline set to ASC germline set.

In piglet: Program for Inferring Immunoglobulin Allele Similarity Clusters and Genotypes

Converts IGHV germline set to ASC germline set.

Description

Converts IGHV germline set to ASC germline set.

Usage

germlineASC(allele_cluster_table, germline)

Arguments

allele_cluster_table	The allele cluster table.
germline	An IGHV germline set with matching names to the "imgt_allele" column in the allele_cluster_table.

Value

Returns the IGHV germline set with the ASC allele names.

Examples

# preferably obtain the latest ASC cluster table
# asc_archive <- recentAlleleClusters(doi="10.5281/zenodo.7429773", get_file = TRUE)

# allele_cluster_table <- extractASCTable(archive_file = asc_archive)

data(HVGERM)

# example allele similarity cluster table
data(allele_cluster_table)

asc_germline <- germlineASC(allele_cluster_table, germline = HVGERM)

piglet documentation built on April 12, 2025, 1:27 a.m.