allele_diff_strings: Calculate differences between characters in columns of germs...

In piglet: Program for Inferring Immunoglobulin Allele Similarity Clusters and Genotypes

Calculate differences between characters in columns of germs and return them as a string vector.

Description

Calculate differences between characters in columns of germs and return them as a string vector.

Usage

allele_diff_strings(germs, X = 0L, non_mismatch_chars_nullable = NULL)

Arguments

germs	A vector of strings representing germ sequences.
X	The threshold index from which to return differences as strings.
non_mismatch_chars_nullable	A set of characters that are ignored when comparing sequences (default: 'N', '.', '-').

Value

A vector of strings containing differences between characters in columns.

Examples

germs = c("ATCG", "ATCC") 
X = 3 
result = allele_diff_strings(germs, X) 
# "A2T", "T3C", "C2G"

piglet documentation built on April 12, 2025, 1:27 a.m.