allele_diff_indices_parallel: Calculate SNPs or their count for each germline-input...

In piglet: Program for Inferring Immunoglobulin Allele Similarity Clusters and Genotypes

Calculate SNPs or their count for each germline-input sequence pair with optional parallel execution.

Description

Calculate SNPs or their count for each germline-input sequence pair with optional parallel execution.

Usage

allele_diff_indices_parallel(
  germs,
  inputs,
  X = 0L,
  parallel = FALSE,
  return_count = FALSE
)

Arguments

germs	A vector of strings representing germline sequences.
inputs	A vector of strings representing input sequences.
X	The threshold index from which to return SNP indices or counts (default: 0).
parallel	A boolean flag to enable parallel processing (default: FALSE).
return_count	A boolean flag to return the count of mutations instead of their indices (default: FALSE).

Value

A list of integer vectors (if return_count = FALSE) or a vector of integers (if return_count = TRUE).

piglet documentation built on April 12, 2025, 1:27 a.m.