recentAlleleClusters: Retrieving allele similarity clusters Zenodo archive

In piglet: Program for Inferring Immunoglobulin Allele Similarity Clusters and Genotypes

Retrieving allele similarity clusters Zenodo archive

Description

A wrapper function for zenodoArchive, download the most recent allele similarity clusters and thresholds from the zenodo archive. The clusters and thresholds are based on https://yaarilab.github.io/IGHV_reference_book/ At the moment only available for human IGHV reference set.

Usage

recentAlleleClusters(
  doi = "10.5281/zenodo.7401189",
  path,
  get_file = FALSE,
  quite = FALSE
)

Arguments

doi	The doi for the archive to download. Default is the IGHV set.
path	The output folder for saving the archive files. Default is to a temporary directory.
get_file	Logical (FALSE by default). Do you want to return the path for the file downloaded.
quite	Logical (FALSE by default). Do you want to suppress informative messages

Value

If get_file is TRUE, the function returns the path to the archive file

Examples

recentAlleleClusters(doi="10.5281/zenodo.7401189")

piglet documentation built on April 12, 2025, 1:27 a.m.