allele_threshold_table: Allele thresholds table

In piglet: Program for Inferring Immunoglobulin Allele Similarity Clusters and Genotypes

Allele thresholds table

Description

A data.table of the allele thresholds table. The V alleles are based on the HVGERM and hv_functionality germline reference set. The D, and the J are based on the AIRR-C reference set (https://zenodo.org/records/10489725). The table contains these columns: allele - the IUIS allele name, asc_allele - the allele name based on allele similarity clusters (only for V), threshold = the genotype threshold for the alleles.

Usage

allele_threshold_table

Format

An object of class data.table (inherits from data.frame) with 262 rows and 4 columns.

References

Peres, et al (2022) doi:10.1101/2022.12.26.521922

piglet documentation built on April 12, 2025, 1:27 a.m.