allele_diff_indices: Calculate differences between characters in columns of germs...

In piglet: Program for Inferring Immunoglobulin Allele Similarity Clusters and Genotypes

Calculate differences between characters in columns of germs and return their indices as an int vector.

Description

Calculate differences between characters in columns of germs and return their indices as an int vector.

Usage

allele_diff_indices(germs, X = 0L, non_mismatch_chars_nullable = NULL)

Arguments

germs	A vector of strings representing germ sequences.
X	The threshold index from which to return differences as indices.
non_mismatch_chars_nullable	A set of characters that are ignored when comparing sequences (default: 'N', '.', '-').

Value

A vector of integers containing indices of differing columns.

Examples

germs = c("ATCG", "ATCC") 
X = 3 
result = allele_diff_indices(germs, X)
# 1, 2, 3

piglet documentation built on April 12, 2025, 1:27 a.m.