API for plinkQC
Genotype Quality Control with 'PLINK'
| Global functions | |
|---|---|
| ancestry_prediction | Man page Source code |
| checkFiltering | Man page Source code |
| checkFormat | Source code |
| checkFormatPlink2 | Source code |
| checkLoadingMat | Man page Source code |
| checkPlink | Man page Source code |
| checkPlink2 | Man page Source code |
| checkRemoveIDs | Man page Source code |
| check_het_and_miss | Man page Source code |
| check_hwe | Man page Source code |
| check_maf | Man page Source code |
| check_relatedness | Man page Source code |
| check_sex | Man page Source code |
| check_snp_missingness | Man page Source code |
| cleanData | Man page Source code |
| convert_to_plink2 | Man page Source code |
| evaluateDirection | Source code |
| evaluateDirectionlist | Source code |
| evaluate_ancestry_prediction | Man page Source code |
| evaluate_check_het_and_miss | Man page Source code |
| evaluate_check_relatedness | Man page Source code |
| evaluate_check_sex | Man page Source code |
| makepath | Source code |
| overviewPerIndividualQC | Man page Source code |
| overviewPerMarkerQC | Man page Source code |
| perIndividualQC | Man page Source code |
| perMarkerQC | Man page Source code |
| plinkQC | Man page |
| plinkQC-package | Man page |
| pruning_ld | Man page Source code |
| relatednessFilter | Man page Source code |
| rename_variant_identifiers | Man page Source code |
| run_ancestry_format | Man page Source code |
| run_ancestry_prediction | Man page Source code |
| run_check_heterozygosity | Man page Source code |
| run_check_missingness | Man page Source code |
| run_check_relatedness | Man page Source code |
| run_check_sex | Man page Source code |
| testNumerics | Man page Source code |
