API for poolfstat
Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data
| Global functions | |
|---|---|
| .block_sum | Man page Source code |
| .block_sum2 | Man page Source code |
| .compute_F3fromF2 | Man page Source code |
| .compute_F3fromF2samples | Man page Source code |
| .compute_F4DfromF2samples | Man page Source code |
| .compute_F4fromF2 | Man page Source code |
| .compute_F4fromF2samples | Man page Source code |
| .compute_H1 | Man page Source code |
| .compute_Q2 | Man page Source code |
| .compute_QmatfromF2samples | Man page Source code |
| .compute_blockDdenom | Man page Source code |
| .compute_snpFstAov | Man page Source code |
| .compute_snpHierFstAov | Man page Source code |
| .compute_snpQ1 | Man page Source code |
| .compute_snpQ1onepop | Man page Source code |
| .compute_snpQ1rw | Man page Source code |
| .compute_snpQ2 | Man page Source code |
| .compute_snpQ2onepair | Man page Source code |
| .compute_snpQ2rw | Man page Source code |
| .extract_allele_names | Man page Source code |
| .extract_nonvscan_counts | Man page Source code |
| .extract_vscan_counts | Man page Source code |
| .find_indelneighbor_idx | Man page Source code |
| .generateF3names | Man page Source code |
| .generateF4names | Man page Source code |
| .scan_allele_info | Man page Source code |
| .simureads_mono | Man page Source code |
| .simureads_poly | Man page Source code |
| add.leaf | Man page Source code |
| bjack_cov | Man page |
| block_sum | Man page |
| block_sum2 | Man page |
| compare.fitted.fstats | Man page Source code |
| compute.f4ratio | Man page Source code |
| compute.fstats | Man page Source code |
| compute.pairwiseFST | Man page Source code |
| computeFST | Man page Source code |
| compute_F3fromF2 | Man page |
| compute_F3fromF2samples | Man page |
| compute_F4DfromF2samples | Man page |
| compute_F4fromF2 | Man page |
| compute_F4fromF2samples | Man page |
| compute_H1 | Man page |
| compute_Q2 | Man page |
| compute_QmatfromF2samples | Man page |
| compute_blockDdenom | Man page |
| compute_snpFstAov | Man page |
| compute_snpHierFstAov | Man page |
| compute_snpQ1 | Man page |
| compute_snpQ1onepop | Man page |
| compute_snpQ1rw | Man page |
| compute_snpQ2 | Man page |
| compute_snpQ2onepair | Man page |
| compute_snpQ2rw | Man page |
| countdata | Man page |
| countdata-class | Man page |
| countdata.subset | Man page Source code |
| countdata2genobaypass | Man page Source code |
| extract_allele_names | Man page |
| extract_nonvscan_counts | Man page |
| extract_vscan_counts | Man page |
| find.tree.popset | Man page Source code |
| find_indelneighbor_idx | Man page |
| fit.graph | Man page Source code |
| fitted.graph | Man page |
| fitted.graph-class | Man page |
| fstats | Man page |
| fstats-class | Man page |
| gen.fitted.graph | Man page |
| generate.graph.params | Man page Source code |
| generate.jackknife.blocks | Man page Source code |
| generateF3names | Man page |
| generateF4names | Man page |
| genobaypass2countdata | Man page Source code |
| genobaypass2pooldata | Man page Source code |
| genoselestim2pooldata | Man page Source code |
| genotreemix2countdata | Man page Source code |
| graph.builder | Man page Source code |
| graph.params | Man page |
| graph.params-class | Man page |
| graph.params2qpGraphFiles | Man page Source code |
| graph.params2symbolic.fstats | Man page Source code |
| heatmap,pairwisefst-method | Man page |
| is.countdata | Man page |
| is.fitted.graph | Man page |
| is.fstats | Man page |
| is.graph.params | Man page |
| is.pairwisefst | Man page |
| is.pooldata | Man page |
| make.example.files | Man page Source code |
| pairwisefst | Man page |
| pairwisefst-class | Man page |
| plot,fitted.graph-method | Man page |
| plot,fstats-method | Man page |
| plot,graph.params-method | Man page |
| plot,pairwisefst-method | Man page |
| plot_fstats | Man page Source code |
| pooldata | Man page |
| pooldata-class | Man page |
| pooldata.subset | Man page Source code |
| pooldata2diyabc | Man page Source code |
| pooldata2genobaypass | Man page Source code |
| pooldata2genoselestim | Man page Source code |
| poolfstat | Man page |
| poolfstat-package | Man page |
| poppair_idx | Man page |
| popsync2pooldata | Man page Source code |
| randomallele.pca | Man page Source code |
| rooted.njtree.builder | Man page Source code |
| scan_allele_info | Man page |
| show,countdata-method | Man page |
| show,fitted.graph-method | Man page |
| show,fstats-method | Man page |
| show,graph.params-method | Man page |
| show,pairwisefst-method | Man page |
| show,pooldata-method | Man page |
| sim.readcounts | Man page Source code |
| simureads_mono | Man page |
| simureads_poly | Man page |
| sliding.windows.fstat | Man page Source code |
| vcf2pooldata | Man page Source code |
