extractAAC: Amino Acid Composition Descriptor
In protr: Generating Various Numerical Representation Schemes for Protein Sequences
extractAAC R Documentation
Amino Acid Composition Descriptor
Description
This function calculates the Amino Acid Composition descriptor (dim: 20).
Usage
extractAAC(x)
Arguments
x
A character vector, as the input protein sequence.
Value
A length 20 named vector
Author(s)
Nan Xiao <https://nanx.me>
References
M. Bhasin, G. P. S. Raghava.
Classification of Nuclear Receptors Based on
Amino Acid Composition and Dipeptide Composition.
Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extractDC and extractTC
for Dipeptide Composition and Tripeptide Composition descriptors.
Examples
x <- readFASTA(system.file("protseq/P00750.fasta", package = "protr"))[[1]]
extractAAC(x)
protr documentation built on Sept. 12, 2024, 6:44 a.m.
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| extractAAC | R Documentation |
Amino Acid Composition Descriptor
Description
This function calculates the Amino Acid Composition descriptor (dim: 20).
Usage
extractAAC(x)
Arguments
x |
A character vector, as the input protein sequence. |
Value
A length 20 named vector
Author(s)
Nan Xiao <https://nanx.me>
References
M. Bhasin, G. P. S. Raghava. Classification of Nuclear Receptors Based on Amino Acid Composition and Dipeptide Composition. Journal of Biological Chemistry, 2004, 279, 23262.
See Also
See extractDC and extractTC
for Dipeptide Composition and Tripeptide Composition descriptors.
Examples
x <- readFASTA(system.file("protseq/P00750.fasta", package = "protr"))[[1]]
extractAAC(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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