Man pages for protr
Generating Various Numerical Representation Schemes for Protein Sequences

AA2DACOR2D Autocorrelations Descriptors for 20 Amino Acids calculated...
AA3DMoRSE3D-MoRSE Descriptors for 20 Amino Acids calculated by Dragon
AAACFAtom-Centred Fragments Descriptors for 20 Amino Acids...
AABLOSUM100BLOSUM100 Matrix for 20 Amino Acids
AABLOSUM45BLOSUM45 Matrix for 20 Amino Acids
AABLOSUM50BLOSUM50 Matrix for 20 Amino Acids
AABLOSUM62BLOSUM62 Matrix for 20 Amino Acids
AABLOSUM80BLOSUM80 Matrix for 20 Amino Acids
AABurdenBurden Eigenvalues Descriptors for 20 Amino Acids calculated...
AAConnConnectivity Indices Descriptors for 20 Amino Acids...
AAConstConstitutional Descriptors for 20 Amino Acids calculated by...
AACPSACPSA Descriptors for 20 Amino Acids calculated by Discovery...
AADescAllAll 2D Descriptors for 20 Amino Acids calculated by Dragon
AAEdgeAdjEdge Adjacency Indices Descriptors for 20 Amino Acids...
AAEigIdxEigenvalue-Based Indices Descriptors for 20 Amino Acids...
AAFGCFunctional Group Counts Descriptors for 20 Amino Acids...
AAGeomGeometrical Descriptors for 20 Amino Acids calculated by...
AAGETAWAYGETAWAY Descriptors for 20 Amino Acids calculated by Dragon
AAindexAAindex Data of 544 Physicochemical and Biological Properties...
AAInfoInformation Indices Descriptors for 20 Amino Acids calculated...
AAMetaInfoMeta Information for the 20 Amino Acids
AAMOE2D2D Descriptors for 20 Amino Acids calculated by MOE 2011.10
AAMOE3D3D Descriptors for 20 Amino Acids calculated by MOE 2011.10
AAMolPropMolecular Properties Descriptors for 20 Amino Acids...
AAPAM120PAM120 Matrix for 20 Amino Acids
AAPAM250PAM250 Matrix for 20 Amino Acids
AAPAM30PAM30 Matrix for 20 Amino Acids
AAPAM40PAM40 Matrix for 20 Amino Acids
AAPAM70PAM70 Matrix for 20 Amino Acids
AARandicRandic Molecular Profiles Descriptors for 20 Amino Acids...
AARDFRDF Descriptors for 20 Amino Acids calculated by Dragon
AATopoTopological Descriptors for 20 Amino Acids calculated by...
AATopoChgTopological Charge Indices Descriptors for 20 Amino Acids...
AAWalkWalk and Path Counts Descriptors for 20 Amino Acids...
AAWHIMWHIM Descriptors for 20 Amino Acids calculated by Dragon
accAuto Cross Covariance (ACC) for Generating Scales-Based...
extractAACAmino Acid Composition Descriptor
extractAPAACAmphiphilic Pseudo Amino Acid Composition (APseAAC)...
extractBLOSUMBLOSUM and PAM Matrix-Derived Descriptors
extractCTDCCTD Descriptors - Composition
extractCTDCClassCTD Descriptors - Composition (with customized amino acid...
extractCTDDCTD Descriptors - Distribution
extractCTDDClassCTD Descriptors - Distribution (with customized amino acid...
extractCTDTCTD Descriptors - Transition
extractCTDTClassCTD Descriptors - Transition (with customized amino acid...
extractCTriadConjoint Triad Descriptor
extractCTriadClassConjoint Triad Descriptor (with customized amino acid...
extractDCDipeptide Composition Descriptor
extractDescScalesScales-Based Descriptors with 20+ classes of Molecular...
extractFAScalesScales-Based Descriptors derived by Factor Analysis
extractGearyGeary Autocorrelation Descriptor
extractMDSScalesScales-Based Descriptors derived by Multidimensional Scaling
extractMoranMoran Autocorrelation Descriptor
extractMoreauBrotoNormalized Moreau-Broto Autocorrelation Descriptor
extractPAACPseudo Amino Acid Composition (PseAAC) Descriptor
extractProtFPAmino Acid Properties Based Scales Descriptors (Protein...
extractProtFPGapAmino Acid Properties Based Scales Descriptors (Protein...
extractPSSMCompute PSSM (Position-Specific Scoring Matrix) for given...
extractPSSMAccProfile-based protein representation derived by PSSM...
extractPSSMFeatureProfile-based protein representation derived by PSSM...
extractQSOQuasi-Sequence-Order (QSO) Descriptor
extractScalesScales-Based Descriptors derived by Principal Components...
extractScalesGapScales-Based Descriptors derived by Principal Components...
extractSOCNSequence-Order-Coupling Numbers
extractTCTripeptide Composition Descriptor
getUniProtRetrieve Protein Sequences from UniProt by Protein ID
OptAA3dOptAA3d.sdf - 20 Amino Acids Optimized with MOE 2011.10...
parGOSimProtein Sequence Similarity Calculation based on Gene...
parSeqSimParallellized Protein Sequence Similarity Calculation based...
protcheckProtein sequence amino acid type sanity check
protr-packageGenerating Various Numerical Representation Schemes for...
protsegProtein Sequence Segmentation/Partition
readFASTARead Protein Sequences in FASTA Format
readPDBRead Protein Sequences in PDB Format
twoGOSimProtein Similarity Calculation based on Gene Ontology (GO)...
twoSeqSimProtein Sequence Alignment for Two Protein Sequences
protr documentation built on Nov. 18, 2017, 9:03 a.m.