protcheck: Protein sequence amino acid type sanity check
In protr: Generating Various Numerical Representation Schemes for Protein Sequences
View source: R/misc-03-protcheck.R
protcheck R Documentation
Protein sequence amino acid type sanity check
Description
This function checks if the protein sequence's amino acid types
are in the 20 default types.
Usage
protcheck(x)
Arguments
x
A character vector, as the input protein sequence.
Value
Logical. TRUE if all of the amino acid types
of the sequence are within the 20 default types.
Author(s)
Nan Xiao <https://nanx.me>
Examples
x <- readFASTA(system.file("protseq/P00750.fasta", package = "protr"))[[1]]
protcheck(x) # TRUE
protcheck(paste(x, "Z", sep = "")) # FALSE
protr documentation built on Sept. 12, 2024, 6:44 a.m.
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View source: R/misc-03-protcheck.R
| protcheck | R Documentation |
Protein sequence amino acid type sanity check
Description
This function checks if the protein sequence's amino acid types are in the 20 default types.
Usage
protcheck(x)
Arguments
x |
A character vector, as the input protein sequence. |
Value
Logical. TRUE if all of the amino acid types
of the sequence are within the 20 default types.
Author(s)
Nan Xiao <https://nanx.me>
Examples
x <- readFASTA(system.file("protseq/P00750.fasta", package = "protr"))[[1]]
protcheck(x) # TRUE
protcheck(paste(x, "Z", sep = "")) # FALSE
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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