protr
Generating Various Numerical Representation Schemes for Protein Sequences

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77
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AAPAM120: PAM120 Matrix for 20 Amino Acids extractCTDC: CTD Descriptors - Composition extractPSSMFeature: Profile-based protein representation derived by PSSM... extractQSO: Quasi-Sequence-Order (QSO) Descriptor extractSOCN: Sequence-Order-Coupling Numbers extractTC: Tripeptide Composition Descriptor protcheck: Protein sequence amino acid type sanity check
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API
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AAPAM40 parGOSim AAEigIdx extractCTDT AAConn extractPAAC AAInfo
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Source code
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R/pcm-01-extractScales.R R/pcm-01-extractScalesGap.R R/desc-05-Moran.R R/protr-datalist.R R/desc-01-AAC.R R/misc-05-getUniProt.R R/desc-07-CTDC.R
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protr: Generating Various Numerical Representation Schemes for Protein Sequences
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API for protr
Generating Various Numerical Representation Schemes for Protein Sequences

Global functions
AA2DACOR Man page
AA3DMoRSE Man page
AAACF Man page
AABLOSUM100 Man page
AABLOSUM45 Man page
AABLOSUM50 Man page
AABLOSUM62 Man page
AABLOSUM80 Man page
AABurden Man page
AACPSA Man page
AAConn Man page
AAConst Man page
AADescAll Man page
AAEdgeAdj Man page
AAEigIdx Man page
AAFGC Man page
AAGETAWAY Man page
AAGeom Man page
AAInfo Man page
AAMOE2D Man page
AAMOE3D Man page
AAMetaInfo Man page
AAMolProp Man page
AAPAM120 Man page
AAPAM250 Man page
AAPAM30 Man page
AAPAM40 Man page
AAPAM70 Man page
AARDF Man page
AARandic Man page
AATopo Man page
AATopoChg Man page
AAWHIM Man page
AAWalk Man page
AAindex Man page
OptAA3d Man page
acc Man page Source code
extractAAC Man page Source code
extractAPAAC Man page Source code
extractBLOSUM Man page Source code
extractCTDC Man page Source code
extractCTDCClass Man page Source code
extractCTDD Man page Source code
extractCTDDClass Man page Source code
extractCTDT Man page Source code
extractCTDTClass Man page Source code
extractCTriad Man page Source code
extractCTriadClass Man page Source code
extractDC Man page Source code
extractDescScales Man page Source code
extractFAScales Man page Source code
extractGeary Man page Source code
extractMDSScales Man page Source code
extractMoran Man page Source code
extractMoreauBroto Man page Source code
extractPAAC Man page Source code
extractPSSM Man page Source code
extractPSSMAcc Man page Source code
extractPSSMFeature Man page Source code
extractProtFP Man page Source code
extractProtFPGap Man page Source code
extractQSO Man page Source code
extractSOCN Man page Source code
extractScales Man page Source code
extractScalesGap Man page Source code
extractTC Man page Source code
getUniProt Man page Source code
goPairSim Source code
parGOSim Man page Source code
parSeqSim Man page Source code
protcheck Man page Source code
protcheckgap Source code
protr Man page
protr-package Man page
protseg Man page Source code
readFASTA Man page Source code
readPDB Man page Source code
removeGaps Man page Source code
seqPairSim Source code
twoGOSim Man page Source code
twoSeqSim Man page Source code
protr documentation built on July 15, 2018, 9:05 a.m.

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