invert_sdp: Calculate SNP genotype matrix from strain distribution...
In qtl2: Quantitative Trait Locus Mapping in Experimental Crosses
invert_sdp R Documentation
Calculate SNP genotype matrix from strain distribution patterns
Description
Calculate the matrix of SNP genotypes from a vector of strain distribution patterns (SDPs).
Usage
invert_sdp(sdp, n_strains)
Arguments
sdp
Vector of strain distribution patterns (integers between
1 and 2^n-2 where n is the number of strains.
n_strains
Number of strains
Value
Matrix of SNP genotypes, markers x strains, coded as 1
(AA) and 3 (BB). Markers with values other than 1 or 3 are omitted,
and monomorphic markers, are omitted.
See Also
sdp2char(), calc_sdp()
Examples
sdp <- c(m1=1, m2=12, m3=240)
invert_sdp(sdp, 8)
qtl2 documentation built on May 29, 2024, 11:46 a.m.
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| invert_sdp | R Documentation |
Calculate SNP genotype matrix from strain distribution patterns
Description
Calculate the matrix of SNP genotypes from a vector of strain distribution patterns (SDPs).
Usage
invert_sdp(sdp, n_strains)
Arguments
sdp |
Vector of strain distribution patterns (integers between
1 and |
n_strains |
Number of strains |
Value
Matrix of SNP genotypes, markers x strains, coded as 1 (AA) and 3 (BB). Markers with values other than 1 or 3 are omitted, and monomorphic markers, are omitted.
See Also
sdp2char(), calc_sdp()
Examples
sdp <- c(m1=1, m2=12, m3=240)
invert_sdp(sdp, 8)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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