summary_compare_geno: Basic summary of compare_geno object

Description Usage Arguments Value Examples

View source: R/compare_geno.R

Description

From results of compare_geno(), show pairs of individuals with similar genotypes.

Usage

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summary_compare_geno(object, threshold = 0.9, ...)

## S3 method for class 'compare_geno'
summary(object, threshold = 0.9, ...)

## S3 method for class 'summary.compare_geno'
print(x, digits = 2, ...)

Arguments

object

A square matrix with genotype comparisons for pairs of individuals, as output by compare_geno().

threshold

Minimum proportion matches for a pair of individuals to be shown.

...

Ignored

x

Results of summary.compare_geno()

digits

Number of digits to print

Value

Data frame with names of individuals in pair, proportion matches, number of mismatches, number of matches, and total markers genotyped. Last two columns are the numeric indexes of the individuals in the pair.

Examples

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grav2 <- read_cross2(system.file("extdata", "grav2.zip", package="qtl2"))
cg <- compare_geno(grav2)
summary(cg)

qtl2 documentation built on Oct. 18, 2021, 1:06 a.m.