API for rbiom
Read/Write, Analyze, and Visualize 'BIOM' Data
| Global functions | |
|---|---|
| %<>% | Man page |
| %>% | Man page |
| . | Man page |
| .onLoad | Source code |
| [.rbiom | Man page |
| adiv_boxplot | Man page |
| adiv_corrplot | Man page |
| adiv_matrix | Man page |
| adiv_stats | Man page |
| adiv_table | Man page |
| alpha.div | Man page |
| alpha.div-deprecated | Man page |
| as.list.rbiom | Man page |
| as.matrix.rbiom | Man page |
| as.percent | Man page |
| as.percent-deprecated | Man page |
| as_rbiom | Man page |
| availableCores | Man page |
| babies | Man page |
| bdiv_boxplot | Man page |
| bdiv_clusters | Man page |
| bdiv_corrplot | Man page |
| bdiv_distmat | Man page |
| bdiv_heatmap | Man page |
| bdiv_matrix | Man page |
| bdiv_ord_plot | Man page |
| bdiv_ord_table | Man page |
| bdiv_stats | Man page |
| bdiv_table | Man page |
| bdply | Man page |
| beta.div | Man page |
| beta.div-deprecated | Man page |
| biom_merge | Man page |
| blply | Man page |
| comments | Man page |
| comments-deprecated | Man page |
| comments-set-deprecated | Man page |
| comments<- | Man page |
| convert_to | Man page |
| convert_to_SE | Man page |
| convert_to_TSE | Man page |
| convert_to_phyloseq | Man page |
| counts | Man page |
| counts-deprecated | Man page |
| counts-set-deprecated | Man page |
| counts<- | Man page |
| ddply | Man page |
| depth | Man page |
| depth-deprecated | Man page |
| depths_barplot | Man page |
| depths_barplot-deprecated | Man page |
| distmat_ord_table | Man page |
| distmat_stats | Man page |
| documentation_biom.rbiom | Man page |
| documentation_clusters | Man page |
| documentation_cmp | Man page |
| documentation_default | Man page |
| documentation_dist_test | Man page |
| documentation_heatmap | Man page |
| documentation_plot_return | Man page |
| documentation_rank.2 | Man page |
| documentation_rank.NULL | Man page |
| documentation_return.biom | Man page |
| documentation_taxa.4 | Man page |
| export | Man page |
| gems | Man page |
| glimpse | Man page |
| glimpse.rbiom | Man page |
| has.phylogeny | Man page |
| has.phylogeny-deprecated | Man page |
| has.sequences | Man page |
| has.sequences-deprecated | Man page |
| hmp50 | Man page |
| id | Man page |
| id-deprecated | Man page |
| id-set-deprecated | Man page |
| id<- | Man page |
| info | Man page |
| info-deprecated | Man page |
| is.rarefied | Man page |
| is.rarefied-deprecated | Man page |
| ldply | Man page |
| left_join | Man page |
| llply | Man page |
| metadata | Man page |
| metadata-deprecated | Man page |
| metadata-set-deprecated | Man page |
| metadata<- | Man page |
| modify_metadata | Man page |
| mutate | Man page |
| mutate.rbiom | Man page |
| na.omit | Man page |
| na.omit.rbiom | Man page |
| nsamples | Man page |
| nsamples-deprecated | Man page |
| ntaxa | Man page |
| ntaxa-deprecated | Man page |
| phylogeny | Man page |
| phylogeny-deprecated | Man page |
| phylogeny-set-deprecated | Man page |
| phylogeny<- | Man page |
| plot_heatmap | Man page |
| pull | Man page |
| pull.rbiom | Man page |
| rare_corrplot | Man page |
| rare_multiplot | Man page |
| rare_stacked | Man page |
| rarefy | Man page |
| rarefy_cols | Man page |
| rb_init | Source code |
| rbiom | Man page |
| rbiom-deprecated | Man page |
| rbiom-package | Man page |
| rbiom_objects | Man page |
| read.biom | Man page |
| read.biom-deprecated | Man page |
| read.fasta | Man page |
| read.fasta-deprecated | Man page |
| read.tree | Man page |
| read.tree-deprecated | Man page |
| read_biom | Man page |
| read_fasta | Man page |
| read_tree | Man page |
| reexports | Man page |
| relocate | Man page |
| rename | Man page |
| rename.rbiom | Man page |
| repair | Man page |
| repair-deprecated | Man page |
| rescale_cols | Man page |
| rescale_rows | Man page |
| sample.names | Man page |
| sample.names-deprecated | Man page |
| sample.names-set-deprecated | Man page |
| sample.names<- | Man page |
| sample.sums | Man page |
| sample.sums-deprecated | Man page |
| sample_apply | Man page |
| sample_subset | Man page |
| sample_subset-deprecated | Man page |
| sample_sums | Man page |
| select | Man page |
| select-deprecated | Man page |
| select.rbiom | Man page |
| sequences | Man page |
| sequences-deprecated | Man page |
| sequences-set-deprecated | Man page |
| sequences<- | Man page |
| slice | Man page |
| slice.rbiom | Man page |
| slice_head | Man page |
| slice_head.rbiom | Man page |
| slice_max | Man page |
| slice_max.rbiom | Man page |
| slice_metadata | Man page |
| slice_min | Man page |
| slice_min.rbiom | Man page |
| slice_sample | Man page |
| slice_sample.rbiom | Man page |
| slice_tail | Man page |
| slice_tail.rbiom | Man page |
| speed | Man page |
| stats_boxplot | Man page |
| stats_corrplot | Man page |
| stats_table | Man page |
| subset | Man page |
| subset.rbiom | Man page |
| subset_taxa | Man page |
| subtree | Man page |
| subtree-deprecated | Man page |
| taxa.means | Man page |
| taxa.means-deprecated | Man page |
| taxa.names | Man page |
| taxa.names-deprecated | Man page |
| taxa.names-set-deprecated | Man page |
| taxa.names<- | Man page |
| taxa.ranks | Man page |
| taxa.ranks-deprecated | Man page |
| taxa.ranks-set-deprecated | Man page |
| taxa.ranks<- | Man page |
| taxa.rollup | Man page |
| taxa.rollup-deprecated | Man page |
| taxa.sums | Man page |
| taxa.sums-deprecated | Man page |
| taxa_apply | Man page |
| taxa_boxplot | Man page |
| taxa_clusters | Man page |
| taxa_corrplot | Man page |
| taxa_heatmap | Man page |
| taxa_map | Man page |
| taxa_matrix | Man page |
| taxa_max | Man page |
| taxa_max-deprecated | Man page |
| taxa_means | Man page |
| taxa_stacked | Man page |
| taxa_stats | Man page |
| taxa_sums | Man page |
| taxa_table | Man page |
| taxonomy | Man page |
| taxonomy-deprecated | Man page |
| taxonomy-set-deprecated | Man page |
| taxonomy<- | Man page |
| tips | Man page |
| tips-deprecated | Man page |
| top.taxa | Man page |
| top.taxa-deprecated | Man page |
| top_taxa | Man page |
| top_taxa-deprecated | Man page |
| tree_subset | Man page |
| unifrac | Man page |
| unifrac-deprecated | Man page |
| with | Man page |
| with.rbiom | Man page |
| within.rbiom | Man page |
| write.biom | Man page |
| write.biom-deprecated | Man page |
| write.fasta | Man page |
| write.fasta-deprecated | Man page |
| write.tree | Man page |
| write.tree-deprecated | Man page |
| write.xlsx | Man page |
| write.xlsx-deprecated | Man page |
| write_biom | Man page |
| write_counts | Man page |
| write_fasta | Man page |
| write_metadata | Man page |
| write_mothur | Man page |
| write_qiime2 | Man page |
| write_taxonomy | Man page |
| write_tree | Man page |
| write_xlsx | Man page |
