refdb_clean_tax_remove_extra: Remove extra words from taxonomic names
In refdb: A DNA Reference Library Manager
refdb_clean_tax_remove_extra R Documentation
Remove extra words from taxonomic names
Description
Remove extra words from taxonomic names
Usage
refdb_clean_tax_remove_extra(x, cols = NULL)
Arguments
x
a reference database.
cols
an optional vector of column names.
If NULL (default), the function is applied to the columns
associated with the taxonomy and organism fields.
Details
As the function can match words like "g.", "s." or "x", which can
have a signification in some nomenclatures, it is recommended to
execute refdb_clean_tax_harmonize_nomenclature first.
Value
A reference database.
lib <- read.csv(system.file("extdata", "baetidae_bold.csv", package = "refdb"))
lib <- refdb_set_fields_BOLD(lib)
refdb_clean_tax_remove_extra(lib)
refdb documentation built on Sept. 22, 2022, 5:07 p.m.
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| refdb_clean_tax_remove_extra | R Documentation |
Remove extra words from taxonomic names
Description
Remove extra words from taxonomic names
Usage
refdb_clean_tax_remove_extra(x, cols = NULL)
Arguments
x |
a reference database. |
cols |
an optional vector of column names.
If |
Details
As the function can match words like "g.", "s." or "x", which can have a signification in some nomenclatures, it is recommended to execute refdb_clean_tax_harmonize_nomenclature first.
Value
A reference database.
lib <- read.csv(system.file("extdata", "baetidae_bold.csv", package = "refdb")) lib <- refdb_set_fields_BOLD(lib) refdb_clean_tax_remove_extra(lib)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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