refdb_filter_seq_stopcodon: Filter sequences based on their number of of stop codons.
In refdb: A DNA Reference Library Manager

refdb_filter_seq_stopcodon

R Documentation

Filter sequences based on their number of of stop codons.

Description

Filter sequences based on their number of of stop codons.

Usage

refdb_filter_seq_stopcodon(x, max_stop = 0, code, codon_frame = NA)

Arguments

`x`	a reference database.
`max_stop`	maximum number of stop codons.
`code`	an integer indicating the genetic code to use for translation (see genetic-codes).
`codon_frame`	an integer giving the nucleotide position where to start translation. If `NA` (the default), the three different frames are tested and the frame producing the lowest number of stop codons will be used.

Value

A tibble (filtered reference database).

Examples

lib <- read.csv(system.file("extdata", "baetidae_bold.csv", package = "refdb"))
lib <- refdb_set_fields_BOLD(lib)
refdb_filter_seq_stopcodon(lib, code = 5)

refdb documentation built on Sept. 22, 2022, 5:07 p.m.