refdb_filter_seq_primer: Filter sequences based on the presence of primers.
In refdb: A DNA Reference Library Manager

refdb_filter_seq_primer

R Documentation

Filter sequences based on the presence of primers.

Description

Filter sequences based on the presence of primers.

Usage

refdb_filter_seq_primer(
  x,
  primer_forward = NULL,
  primer_reverse = NULL,
  max_error_forward = 0.1,
  max_error_reverse = 0.1
)

Arguments

`x`	a reference database.
`primer_forward`	forward primer.
`primer_reverse`	reverse primer.
`max_error_forward, max_error_reverse`	maximum error for match (frequency base on primer length).

Value

A tibble (filtered reference database).

Examples

lib <- read.csv(system.file("extdata", "baetidae_bold.csv", package = "refdb"))
lib <- refdb_set_fields_BOLD(lib)
refdb_filter_seq_primer(lib, "ACTA")

refdb documentation built on Sept. 22, 2022, 5:07 p.m.