rehh: Searching for Footprints of Selection using Haplotype Homozygosity Based Tests

Functions for the detection of footprints of selection on dense SNP data using Extended Homozygosity Haplotype (EHH) based tests. The package includes computation of EHH, iHS (within population) and Rsb or XP-EHH (across pairs of populations) statistics. Various plotting functions are also included to facilitate visualization and interpretation of the results.

Package details

AuthorMathieu Gautier, Alexander Klassmann and Renaud Vitalis
MaintainerMathieu Gautier <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the rehh package in your browser

Any scripts or data that you put into this service are public.

rehh documentation built on May 30, 2017, 2:35 a.m.