extract_regions: Extract regions from a scan
In rehh: Searching for Footprints of Selection using 'Extended Haplotype Homozygosity' Based Tests

Extract regions from a scan data frame.

1	extract_regions(scan, regions, right = TRUE)

`scan`	A data frame with chromosomal positions like obtained by `scan_hh`, `ihh2ihs`, `ines2rsb` or `ies2xpehh`.
`regions`	A data frame with genomic regions like the output of `calc_candidate_regions`.
`right`	logical, indicating if the intervals should be closed on the right (and open on the left) or vice versa.

A subset of data frame scan, retaining only positions belonging to the regions specified in data frame regions.

library(rehh.data)
data(wgscan.cgu)
regions <- data.frame(CHR = 12, START = 2.88e+7, END = 2.92e+7)
extract_regions(wgscan.cgu, regions)

rehh documentation built on Sept. 15, 2021, 5:06 p.m.

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