Searching for Footprints of Selection using Haplotype Homozygosity Based Tests

bifurcation.diagram | plot of an haplotype bifurcation diagram |

calc_ehh | EHH and iHH computations at a given core SNP |

calc_ehhs | EHHS and iES computations at a given core SNP |

data2haplohh | Converting data into an object of class haplohh |

distribplot | Distribution of standardized iHS or Rsb values |

haplohh_cgu_bta12 | Example of an 'haplohh' object |

haplohh-class | Class '"haplohh"' |

ies2rsb | Compute Rsb (standardized ratio of iES from two populations) |

ies2xpehh | Compute xpEHH (standardized ratio of iES from two... |

ihh2ihs | Compute iHS (standardized iHH) |

ihsplot | Plot iHS over a genome |

make.example.files | Creating example input files |

rehh-package | Searching for footprints of selection using Haplotype... |

rsbplot | Plot Rsb over a genome |

scan_hh | Computing EHH based statistics over a whole chromosome |

xpehhplot | Plot XPEHH over a genome |

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