Files in retrocombinator

Simulating the Molecular Evolutionary Process of Retrotransposon Recombination

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/RcppExports.R R/simulateEvolution.R R/helper.R R/retrocombinator.R R/params.R R/parseSimulationOutput.R R/visualise.R

src/sequence.cpp

src/point_mutation_models.cpp

src/burster.h

src/rcpp_simulation.cpp

src/RcppExports.cpp

src/exception.h

src/rand_maths.h

src/families.h

src/simulation.cpp

src/activity_tracker.h

src/mutator.h

src/output.cpp

src/mutator.cpp

src/activity_tracker.cpp

src/families.cpp

src/output.h

src/pool.h

src/simulation.h

src/representative.cpp

src/sequence.h

src/point_mutation_models.h

src/utilities.cpp

src/burster.cpp

src/constants.h

src/rand_maths.cpp

src/pool.cpp

src/utilities.h

src/representative.h

src/cpp/main.cpp

src/test/test_point_mutation_models.h

src/test/test_sequence.h

src/test/test_simulation.expected

src/test/test_simulation.h

src/test/test_mutator.h

src/test/test_utilities.h

src/test/test_header.h

src/test/test_pool.h

src/test/test_activity_tracker.h

src/test/test.cpp

src/test/test_rand_maths.h

inst/doc/simulations.Rmd inst/doc/simulations.R inst/doc/simulations.pdf

inst/testdata/test_parser_expected.rds

inst/testdata/test_simulation.test

build/vignette.rds

tests/testthat.R tests/testthat/test_parser.R vignettes/simulations.Rmd man/retrocombinator-package.Rd man/RecombParams.Rd man/MutationParams.Rd man/plotEvolution.Rd man/SelectionParams.Rd man/FamilyParams.Rd man/parseSimulationOutput.Rd man/is.ActivityParams.Rd man/ActivityParams.Rd man/simulateEvolution.Rd man/SimulationParams.Rd man/SequenceParams.Rd man/BurstParams.Rd man/is.FamilyParams.Rd man/is.SequenceParams.Rd man/is.OutputParams.Rd man/is.RecombParams.Rd man/is.SeedParams.Rd man/is.BurstParams.Rd man/is.SelectionParams.Rd man/is.SimulationParams.Rd man/OutputParams.Rd man/is.MutationParams.Rd man/SeedParams.Rd

retrocombinator documentation built on Nov. 12, 2021, 1:07 a.m.