Description Usage Arguments Value Examples
Create OutputParams object
1 2 3 4 5 6 7 8 | OutputParams(
outputFilename = "simulationOutput.out",
outputNumInitialDistance = 10,
outputNumPairwiseDistance = 10,
outputNumFamilyLabels = 10,
outputNumFamilyMatrix = 10,
outputMinSimilarity = 0.5
)
|
outputFilename |
Where should the results of the simulation be saved? (This can be parsed by input_file) |
outputNumInitialDistance |
How many times across the simulation will we output the distance of each sequence to the initial sequence |
outputNumPairwiseDistance |
How many times across the simulation will we output the pairwise distance between all pairs of sequences |
outputNumFamilyLabels |
How many times across the simulation will we output the representative sequences for each family? |
outputNumFamilyMatrix |
How many times across the simulation will we output the pairwise distances between family representatives? |
outputMinSimilarity |
What is the minimum similarity between two sequences we should report on? |
A bundling of the parameters given to it as a SimulationParams object
1 | outputParams <- OutputParams(outputFilename = 'myOutputFilename.out')
|
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