BurstParams: Create BurstParams object

In retrocombinator: Simulating the Molecular Evolutionary Process of Retrotransposon Recombination

Description

Create BurstParams object

Usage

BurstParams(burstProbability = 0.1, burstMean = 1, maxTotalCopies = 50)

Arguments

burstProbability	The probability that an active retrotransposon will increase in copy number during a time jump of one timestep
burstMean	The Poisson mean for the distribution that specifies how many new sequences an active sequence will create during bursting
maxTotalCopies	The largest population size of sequences to keep track of (if this is exceeded, sequences are randomly discarded to simulate death)

Value

A bundling of the parameters given to it as a BurstParams object

Examples

burstParams <- BurstParams(burstMean = 2)

retrocombinator documentation built on Nov. 12, 2021, 1:07 a.m.