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#' @title Rush
#'
#' @description
#' The `Rush` class manages a rush network by starting, monitoring, and stopping workers.
#' It shares all task-related methods (e.g., fetching results, pushing tasks) with [RushWorker].
#' A `Rush` instance is created with the [rsh()] function which requires a network ID and a config argument
#' to connect to the Redis database via the \CRANpkg{redux} package.
#'
#' @section Tasks:
#' Tasks are the unit in which workers exchange information.
#' The main components of a task are the key, computational state, input (`xs`), and output (`ys`).
#' The key is a unique identifier for the task in the Redis database.
#' The four possible computational states are `"running"`, `"finished"`, `"failed"`, and `"queued"`.
#' The input `xs` and output `ys` are lists that can contain arbitrary data.
#'
#' Methods to create a task:
#'
#' * `$push_running_tasks(xss)`: Create running tasks
#' * `$push_finished_tasks(xss, yss)`: Create finished tasks.
#' * `$push_failed_tasks(xss, conditions)`: Create failed tasks.
#' * `$push_tasks(xss)`: Create queued tasks.
#'
#' These methods return the key of the created tasks.
#' The methods work on multiple tasks at once, so `xss` and `yss` are lists of inputs and outputs.
#'
#' Methods to change the state of an existing task:
#'
#' * `$finish_tasks(keys, yss)`: Save the output of tasks and mark them as finished.
#' * `$fail_tasks(keys, conditions)`: Mark tasks as failed and optionally save the condition objects.
#' * `$pop_task()`: Pop a task from the queue and mark it as running.
#'
#' The following methods are used to fetch tasks:
#'
#' * `$fetch_tasks()`: Fetch all tasks.
#' * `$fetch_finished_tasks()`: Fetch finished tasks.
#' * `$fetch_failed_tasks()`: Fetch failed tasks.
#' * `$fetch_tasks_with_state()`: Fetch tasks with different states at once.
#' * `$fetch_new_tasks()`: Fetch new tasks and optionally block until new tasks are available.
#'
#' The methods return a `data.table()` with the tasks.
#'
#' Tasks have the following fields:
#'
#' * `xs`: The input of the task.
#' * `ys`: The output of the task.
#' * `xs_extra`: Metadata created when creating the task.
#' * `ys_extra`: Metadata created when finishing the task.
#' * `condition`: Condition object when the task failed.
#' * `worker_id`: The id of the worker that created the task.
#'
#' @section Workers:
#' Workers are spawned with the `$start_workers()` method on `mirai` daemons.
#' Use [mirai::daemons()] to start daemons.
#' Workers can be started on the
#' * [local machine](https://mirai.r-lib.org/articles/mirai.html#local-daemons),
#' * [remote machine](https://mirai.r-lib.org/articles/mirai.html#remote-daemons---ssh-direct)
#' * or [HPC cluster](https://mirai.r-lib.org/articles/mirai.html#hpc-clusters)
#' using the \CRANpkg{mirai} package.
#'
#' Alternatively, workers can be started locally with the `$start_local_workers()` method
#' via the \CRANpkg{processx} package.
#' Or a help script can be generated with the `$worker_script()` method that can be run anywhere.
#' The only requirement is that the worker can connect to the Redis database.
#'
#' @section Worker Loop:
#' The worker loop is the main function that is run on the workers.
#' It is defined by the user and is passed to the `$start_workers()` method.
#'
#' @section Debugging:
#' The `mirai::mirai` objects started with `$start_workers()` are stored in `$processes_mirai`.
#' Standard output and error of the workers can be written to log files
#' with the `message_log` and `output_log` arguments of `$start_workers()`.
#'
#' @template param_network_id
#' @template param_config
#' @template param_worker_loop
#' @template param_packages
#' @template param_lgr_thresholds
#' @template param_lgr_buffer_size
#' @template param_heartbeat_period
#' @template param_heartbeat_expire
#' @template param_message_log
#' @template param_output_log
#'
#' @return Object of class [R6::R6Class] and `Rush`.
#' @export
#' @examples
#' if (redux::redis_available()) {
#' config_local = redux::redis_config()
#' rush = rsh(network_id = "test_network", config = config_local)
#' rush
#' }
Rush = R6::R6Class(
"Rush",
public = list(
#' @field processes_processx ([processx::process])\cr
#' List of processes started with `$start_local_workers()`.
processes_processx = NULL,
#' @field processes_mirai ([mirai::mirai])\cr
#' List of mirai processes started with `$start_remote_workers()`.
processes_mirai = NULL,
#' @description
#' Creates a new instance of this [R6][R6::R6Class] class.
initialize = function(network_id = NULL, config = NULL) {
private$.network_id = assert_string(network_id, null.ok = TRUE) %??% uuid::UUIDgenerate()
private$.config = assert_class(config, "redis_config", null.ok = TRUE) %??%
rush_env$config %??%
redux::redis_config()
if (!redux::redis_available(private$.config)) {
error_config("Can't connect to Redis. Check the configuration.")
}
private$.connector = redux::hiredis(private$.config)
},
#' @description
#' Helper for print outputs.
#'
#' @param ... (ignored).
#'
#' @return (`character()`).
format = function(...) {
sprintf("<%s>", class(self)[1L])
},
#' @description
#' Print method.
#'
#' @return (`character()`).
print = function() {
cat_cli({
cli::cli_h1("{.cls {class(self)[1L]}}")
cli::cli_li("Running Workers: {self$n_running_workers}")
cli::cli_li("Queued Tasks: {self$n_queued_tasks}")
cli::cli_li("Running Tasks: {self$n_running_tasks}")
cli::cli_li("Finished Tasks: {self$n_finished_tasks}")
cli::cli_li("Failed Tasks: {self$n_failed_tasks}")
})
},
#' @description
#' Reconnect to Redis.
#' The connection breaks when the Rush object is saved to disk.
#' Call this method to reconnect after loading the object.
reconnect = function() {
private$.connector = redux::hiredis(private$.config)
},
#' @description
#' Start workers to run the worker loop in `mirai::daemons()`.
#' Initializes a [RushWorker] in each process and starts the worker loop.
#'
#' @param ... (`any`)\cr
#' Arguments passed to `worker_loop`.
#' @param n_workers (`integer(1)`)\cr
#' Number of workers to be started.
start_workers = function(
worker_loop,
...,
n_workers = NULL,
packages = NULL,
lgr_thresholds = NULL,
lgr_buffer_size = NULL,
message_log = NULL,
output_log = NULL
) {
n_workers = assert_count(n_workers %??% rush_env$n_workers %??% 1, .var.name = "n_workers")
lgr_thresholds = assert_vector(
lgr_thresholds %??% rush_env$lgr_thresholds,
names = "named",
null.ok = TRUE,
.var.name = "lgr_thresholds"
)
lgr_buffer_size = assert_count(
lgr_buffer_size %??% rush_env$lgr_buffer_size %??% 0,
.var.name = "lgr_buffer_size"
)
mirai_status = status()
# check number of daemons
if (!mirai_status$connections) {
error_config("No daemons available. Start daemons with `mirai::daemons()`")
}
# mirai is only available when mirai is started with a dispatcher
if (!is.null(mirai_status$mirai) && n_workers > mirai_status$connections - mirai_status$mirai["executing"]) {
warning_config(
"Number of workers %i exceeds number of available daemons %i",
n_workers,
mirai_status$connections - mirai_status$mirai["executing"]
)
}
# push worker config to redis
private$.push_worker_config(
worker_loop = worker_loop,
...,
packages = packages
)
lg$info("Starting %i worker(s)", n_workers)
# reduce redis config
config = mlr3misc::discard(unclass(self$config), is.null)
config$url = NULL
# generate worker ids
worker_ids = adjective_animal(n = n_workers)
# start rush worker with mirai
self$processes_mirai = c(
self$processes_mirai,
set_names(
mirai_map(
worker_ids,
rush::start_worker,
.args = list(
network_id = private$.network_id,
config = config,
lgr_thresholds = lgr_thresholds,
lgr_buffer_size = lgr_buffer_size,
message_log = message_log,
output_log = output_log
)
),
worker_ids
)
)
invisible(worker_ids)
},
#' @description
#' Start workers locally with `processx`.
#' Initializes a [RushWorker] in each process and starts the worker loop.
#' Use `$wait_for_workers()` to wait until the workers are registered in the network.
#'
#' @param ... (`any`)\cr
#' Arguments passed to `worker_loop`.
#' @param n_workers (`integer(1)`)\cr
#' Number of workers to be started.
#' @param supervise (`logical(1)`)\cr
#' Whether to kill the workers when the main R process is shut down.
start_local_workers = function(
worker_loop,
...,
n_workers = NULL,
packages = NULL,
lgr_thresholds = NULL,
lgr_buffer_size = NULL,
supervise = TRUE,
message_log = NULL,
output_log = NULL
) {
n_workers = assert_count(n_workers %??% rush_env$n_workers %??% 1, .var.name = "n_workers")
lgr_thresholds = assert_vector(
lgr_thresholds %??% rush_env$lgr_thresholds,
names = "named",
null.ok = TRUE,
.var.name = "lgr_thresholds"
)
lgr_buffer_size = assert_count(
lgr_buffer_size %??% rush_env$lgr_buffer_size %??% 0,
.var.name = "lgr_buffer_size"
)
assert_flag(supervise)
r = private$.connector
# push worker config to redis
private$.push_worker_config(
worker_loop = worker_loop,
...,
packages = packages
)
lg$info("Starting %i worker(s)", n_workers)
# prepare config for serialization
# redux cannot handle the url field, it is derived from the other fields
config = mlr3misc::discard(unclass(self$config), is.null)
config$url = NULL
# generate worker ids
worker_ids = adjective_animal(n = n_workers)
self$processes_processx = c(
self$processes_processx,
set_names(
map(worker_ids, function(worker_id) {
# serialize arguments to a temp file to avoid string interpolation
args = list(
network_id = private$.network_id,
worker_id = worker_id,
config = config,
lgr_thresholds = lgr_thresholds,
lgr_buffer_size = lgr_buffer_size,
message_log = message_log,
output_log = output_log
)
args_file = tempfile(fileext = ".rds")
saveRDS(args, args_file)
processx::process$new(
"Rscript",
args = c("-e", sprintf("do.call(rush::start_worker, readRDS(%s))", shQuote(args_file))),
supervise = supervise,
stderr = "|"
)
}),
worker_ids
)
)
invisible(worker_ids)
},
#' @description
#' Start workers to run the worker loop in `mirai::daemons()`.
#' Initializes a [RushWorker] in each process and starts the worker loop.
#'
#' @param ... (`any`)\cr
#' Arguments passed to `worker_loop`.
#' @param n_workers (`integer(1)`)\cr
#' Number of workers to be started.
start_remote_workers = function(
worker_loop,
...,
n_workers = NULL,
packages = NULL,
lgr_thresholds = NULL,
lgr_buffer_size = NULL,
message_log = NULL,
output_log = NULL
) {
warn_deprecated("$start_remote_workers()")
self$start_workers(
worker_loop = worker_loop,
...,
n_workers = n_workers,
packages = packages,
lgr_thresholds = lgr_thresholds,
lgr_buffer_size = lgr_buffer_size,
message_log = message_log,
output_log = output_log
)
},
#' @description
#' Generate a script to start workers.
#' Run this script `n` times to start `n` workers.
#'
#' @param ... (`any`)\cr
#' Arguments passed to `worker_loop`.
worker_script = function(
worker_loop,
...,
packages = NULL,
lgr_thresholds = NULL,
lgr_buffer_size = NULL,
heartbeat_period = NULL,
heartbeat_expire = NULL,
message_log = NULL,
output_log = NULL
) {
lgr_thresholds = assert_vector(
lgr_thresholds %??% rush_env$lgr_thresholds,
names = "named",
null.ok = TRUE,
.var.name = "lgr_thresholds"
)
lgr_buffer_size = assert_count(
lgr_buffer_size %??% rush_env$lgr_buffer_size %??% 0,
.var.name = "lgr_buffer_size"
)
# push worker config to redis
private$.push_worker_config(
worker_loop = worker_loop,
...,
packages = packages
)
# convert arguments to character
args = list(network_id = shQuote(private$.network_id, type = "sh"))
config = mlr3misc::discard(unclass(self$config), is.null)
config$url = NULL
config = paste(
imap(config, function(value, name) sprintf("%s = %s", name, shQuote(value, type = "sh"))),
collapse = ", "
)
args[["config"]] = paste0("list(", config, ")")
if (!is.null(lgr_thresholds)) {
lgr_thresholds = paste(
imap(lgr_thresholds, function(value, name) {
sprintf("%s = %s", shQuote(name, type = "sh"), shQuote(value, type = "sh"))
}),
collapse = ", "
)
args[["lgr_thresholds"]] = paste0("c(", lgr_thresholds, ")")
args[["lgr_buffer_size"]] = lgr_buffer_size
}
if (!is.null(heartbeat_period)) {
args[["heartbeat_period"]] = heartbeat_period
}
if (!is.null(heartbeat_expire)) {
args[["heartbeat_expire"]] = heartbeat_expire
}
if (!is.null(message_log)) {
args[["message_log"]] = shQuote(message_log, type = "sh")
}
if (!is.null(output_log)) {
args[["output_log"]] = shQuote(output_log, type = "sh")
}
args = paste(imap(args, function(value, name) sprintf("%s = %s", name, value)), collapse = ", ")
lg$info("Creating worker script")
lg$info("Rscript -e \"rush::start_worker(%s)\"", args)
invisible(sprintf("Rscript -e \"rush::start_worker(%s)\"", args))
},
#' @description
#' Wait until workers are registered in the network.
#' Either `n`, `worker_ids` or both must be provided.
#'
#' @param n (`integer(1)`)\cr
#' Number of workers to wait for.
#' If `NULL`, wait for all workers in `worker_ids`.
#' @param worker_ids (`character()`)\cr
#' Worker ids to wait for.
#' If `NULL`, wait for any `n` workers to be registered.
#' @param timeout (`numeric(1)`)\cr
#' Timeout in seconds.
#' Default is `Inf`.
wait_for_workers = function(n = NULL, worker_ids = NULL, timeout = Inf) {
assert_count(n, null.ok = TRUE)
assert_character(worker_ids, null.ok = TRUE)
assert_number(timeout)
timeout = if (is.finite(timeout)) timeout else rush_config()$start_worker_timeout %??% Inf
start_time = Sys.time()
if (is.null(n) && is.null(worker_ids)) {
error_config("Either `n`, `worker_ids` or both must be provided.")
}
if (!is.null(n) && !is.null(worker_ids) && n > length(worker_ids)) {
error_config("Number of workers to wait for %i exceeds number of worker ids %i", n, length(worker_ids))
}
n = n %??% length(worker_ids)
i = 0
while (difftime(Sys.time(), start_time, units = "secs") < timeout) {
n_registered_workers = if (is.null(worker_ids)) {
self$n_workers
} else {
length(intersect(self$worker_ids, worker_ids))
}
# print updated number of registered workers
if (n_registered_workers > i) {
i = n_registered_workers
lg$info("%i worker(s) registered", i)
}
if (n_registered_workers >= n) {
return(invisible(self))
}
Sys.sleep(0.1)
}
error_timeout()
invisible(self)
},
#' @description
#' Stop workers.
#'
#' @param worker_ids (`character()`)\cr
#' Worker ids to be stopped.
#' If `NULL` all workers are stopped.
#' @param type (`character(1)`)\cr
#' Type of stopping.
#' Either `"terminate"` or `"kill"`.
#' If `"kill"` the workers are stopped immediately.
#' If `"terminate"` the workers evaluate the currently running task and then terminate.
#' The `"terminate"` option must be implemented in the worker loop.
stop_workers = function(type = "kill", worker_ids = NULL) {
assert_choice(type, c("terminate", "kill"))
worker_ids = assert_subset(worker_ids, self$running_worker_ids) %??% self$running_worker_ids
if (is.null(worker_ids)) {
return(invisible(self))
}
r = private$.connector
if (type == "kill") {
worker_ids_processx = intersect(worker_ids, names(self$processes_processx))
if (length(worker_ids_processx)) {
lg$debug("Killing %i local worker(s)", length(worker_ids_processx))
walk(worker_ids_processx, function(id) {
lg$info("Kill worker '%s'", id)
# kill with processx
killed = self$processes_processx[[id]]$kill()
if (!killed) {
lg$error("Failed to kill worker '%s'", id)
}
# move worker to terminated
r$command(c("SMOVE", private$.get_key("running_worker_ids"), private$.get_key("terminated_worker_ids"), id))
})
}
worker_ids_mirai = intersect(worker_ids, names(self$processes_mirai))
if (length(worker_ids_mirai)) {
lg$debug("Killing %i remote worker(s)", length(worker_ids_mirai))
walk(worker_ids_mirai, function(id) {
lg$info("Kill worker '%s'", id)
# kill with mirai
killed = stop_mirai(self$processes_mirai[[id]])
if (!killed) {
lg$error("Failed to kill worker '%s'", id)
}
# move worker to terminated
r$command(c("SMOVE", private$.get_key("running_worker_ids"), private$.get_key("terminated_worker_ids"), id))
})
}
worker_ids_heartbeat = self$worker_info[heartbeat == TRUE, worker_id]
worker_ids_heartbeat = intersect(worker_ids_heartbeat, worker_ids)
if (length(worker_ids_heartbeat)) {
lg$debug("Killing %i worker(s) with heartbeat", length(worker_ids_heartbeat))
cmds = unlist(
map(worker_ids_heartbeat, function(worker_id) {
list(
c("LPUSH", private$.get_worker_key("kill", worker_id), "TRUE"),
c("SMOVE", private$.get_key("running_worker_ids"), private$.get_key("terminated_worker_ids"), worker_id)
)
}),
recursive = FALSE
)
r$pipeline(.commands = cmds)
}
}
if (type == "terminate") {
lg$debug("Terminating %i worker(s) '%s'", length(worker_ids), as_short_string(worker_ids))
# Push terminate signal to worker
cmds = map(worker_ids, function(worker_id) {
c("SET", private$.get_worker_key("terminate", worker_id), "1")
})
r$pipeline(.commands = cmds)
}
invisible(self)
},
#' @description
#' Detect lost workers.
#' The state of the worker is changed to `"terminated"`.
#'
#' @return (`character()`)\cr
#' Worker ids of detected lost workers.
detect_lost_workers = function() {
r = private$.connector
running_worker_ids = self$running_worker_ids
heartbeat_keys = r$SMEMBERS(private$.get_key("heartbeat_keys"))
running_tasks = self$fetch_running_tasks(fields = "worker_id")
# check mirai workers
if (length(self$processes_mirai)) {
iwalk(self$processes_mirai[intersect(running_worker_ids, names(self$processes_mirai))], function(m, id) {
if (is_mirai_error(m$data) || is_error_value(m$data)) {
lg$error("Lost worker '%s'", id)
# print error messages
walk(self$processes_mirai[[id]]$data, lg$error)
# move worker to terminated
r$command(c("SMOVE", private$.get_key("running_worker_ids"), private$.get_key("terminated_worker_ids"), id))
# identify lost tasks
if (nrow(running_tasks)) {
keys = running_tasks[list(id), keys, on = "worker_id"]
keys = keys[!is.na(keys)]
if (length(keys)) {
lg$error("Lost %i task(s): %s", length(keys), str_collapse(keys))
# Replace interrupt error message
message = if (unclass(m$data) == 19) "Worker has crashed or was killed" else as.character(m$data)
# push failed tasks
conditions = list(list(message = message))
self$fail_tasks(keys, conditions = conditions)
} else {
lg$error("Worker '%s' crashed before evaluating a task", id)
}
}
}
})
}
# check processx workers
if (length(self$processes_processx)) {
iwalk(self$processes_processx[intersect(running_worker_ids, names(self$processes_processx))], function(m, id) {
if (!self$processes_processx[[id]]$is_alive()) {
lg$error("Lost worker '%s'", id)
# print error messages
walk(self$processes_processx[[id]]$read_all_error_lines(), lg$error)
# move worker to terminated
r$command(c("SMOVE", private$.get_key("running_worker_ids"), private$.get_key("terminated_worker_ids"), id))
# identify lost tasks
if (nrow(running_tasks)) {
keys = running_tasks[list(id), keys, on = "worker_id"]
keys = keys[!is.na(keys)]
if (length(keys)) {
lg$error("Lost %i task(s): %s", length(keys), str_collapse(keys))
# push failed tasks
conditions = list(list(message = "Worker has crashed or was killed"))
self$fail_tasks(keys, conditions = conditions)
} else {
lg$error("Worker '%s' crashed before evaluating a task", id)
}
}
}
})
}
# check heartbeat of workers
if (length(heartbeat_keys)) {
running = as.logical(r$pipeline(
.commands = map(heartbeat_keys, function(heartbeat_key) c("EXISTS", heartbeat_key))
))
if (!all(running)) {
# search for associated worker ids
expired_heartbeat_keys = heartbeat_keys[!running]
cmds = map(running_worker_ids, function(worker_id) c("HMGET", private$.get_key(worker_id), "heartbeat"))
all_heartbeat_keys = unlist(r$pipeline(.commands = cmds))
lost_workers = running_worker_ids[all_heartbeat_keys %in% expired_heartbeat_keys]
# set worker state
cmds = map(lost_workers, function(worker_id) {
lg$error("Lost worker '%s'", worker_id)
c("SMOVE", private$.get_key("running_worker_ids"), private$.get_key("terminated_worker_ids"), worker_id)
})
# remove heartbeat keys
cmds = c(cmds, list(c("SREM", private$.get_key("heartbeat_keys"), expired_heartbeat_keys)))
r$pipeline(.commands = cmds)
# identify and fail lost tasks
if (nrow(running_tasks) && length(lost_workers)) {
walk(lost_workers, function(worker_id) {
keys = running_tasks[list(worker_id), keys, on = "worker_id"]
keys = keys[!is.na(keys)]
if (length(keys)) {
lg$error("Lost %i task(s): %s", length(keys), str_collapse(keys))
conditions = list(list(message = "Worker has crashed or was killed"))
self$fail_tasks(keys, conditions = conditions)
} else {
lg$error("Worker '%s' crashed before evaluating a task", worker_id)
}
})
}
}
}
self$terminated_worker_ids[self$terminated_worker_ids %in% running_worker_ids]
},
#' @description
#' Stop workers and delete data stored in redis.
#'
#' @param workers (`logical(1)`)\cr
#' Whether to stop the workers or only delete the data.
#' Default is `TRUE`.
reset = function(workers = TRUE) {
assert_flag(workers)
r = private$.connector
cmds = if (workers) {
# stop workers
self$stop_workers(type = "kill")
# reset fields set by starting workers
self$processes_processx = NULL
self$processes_mirai = NULL
# remove worker specific keys
cmds = unlist(
map(self$worker_ids, function(worker_id) {
list(
c("DEL", private$.get_key(worker_id)),
c("DEL", private$.get_worker_key("terminate", worker_id)),
c("DEL", private$.get_worker_key("kill", worker_id)),
c("DEL", private$.get_worker_key("events", worker_id))
)
}),
recursive = FALSE
)
# remove network specific keys
c(
cmds,
list(
c("DEL", private$.get_key("terminate")),
c("DEL", private$.get_key("worker_ids")),
c("DEL", private$.get_key("running_worker_ids")),
c("DEL", private$.get_key("terminated_worker_ids")),
c("DEL", private$.get_key("start_args")),
c("DEL", private$.get_key("terminate_on_idle")),
c("DEL", private$.get_key("local_workers")),
c("DEL", private$.get_key("heartbeat_keys"))
)
)
}
# remove all tasks, lists, and sets
cmds = c(cmds, map(self$tasks, function(key) c("DEL", key)))
cmds = c(
cmds,
list(
c("DEL", private$.get_key("queued_tasks")),
c("DEL", private$.get_key("running_tasks")),
c("DEL", private$.get_key("finished_tasks")),
c("DEL", private$.get_key("failed_tasks")),
c("DEL", private$.get_key("all_tasks"))
)
)
r$pipeline(.commands = cmds)
# reset counters and caches
private$.cached_tasks = data.table()
private$.n_seen_results = 0
invisible(self)
},
#' @description
#' Read log messages written with the `lgr` package by the workers.
#'
#' @param worker_ids (`character()`)\cr
#' Worker ids to be read log messages from.
#' Defaults to all worker ids.
#' @param time_difference (`logical(1)`)\cr
#' Whether to calculate the time difference between log messages.
#'
#' @return `data.table()`\cr
#' Table with level, timestamp, logger, caller and message, and optionally time difference.
read_log = function(worker_ids = NULL, time_difference = FALSE) {
assert_flag(time_difference)
worker_ids = worker_ids %??% self$worker_ids
r = private$.connector
cmds = map(worker_ids, function(worker_id) c("LRANGE", private$.get_worker_key("events", worker_id), 0, -1))
worker_logs = set_names(r$pipeline(.commands = cmds), worker_ids)
tab = rbindlist(
set_names(
map(worker_logs, function(logs) {
rbindlist(map(logs, fromJSON))
}),
worker_ids
),
idcol = "worker_id"
)
if (nrow(tab)) {
tab[, timestamp := as.POSIXct(timestamp, format = "%Y-%m-%d %H:%M:%OS")]
setkeyv(tab, "timestamp")
if (time_difference) {
tab[,
time_difference := difftime(timestamp, shift(timestamp, fill = timestamp[1L]), units = "secs"),
by = worker_id
]
}
}
tab[]
},
#' @description
#' Print log messages written with the `lgr` package by the workers.
#' Log messages are printed with the original logger.
#'
#' @return (`Rush`)\cr
#' Invisible self.
print_log = function() {
r = private$.connector
if (!self$n_workers) {
return(invisible(NULL))
}
walk(self$worker_ids, function(worker_id) {
first_event = private$.log_counter[[worker_id]] %??% 0L
log = r$command(c("LRANGE", private$.get_worker_key("events", worker_id), first_event, -1L))
if (length(log)) {
tab = rbindlist(map(log, fromJSON))
set(tab, j = "worker_id", value = worker_id)
pwalk(tab, function(level, logger, timestamp, msg, ...) {
pkg_logger = lgr::get_logger(logger)
pkg_logger$log(level, "[%s] [%s] %s", worker_id, timestamp, msg)
})
private$.log_counter[[worker_id]] = nrow(tab) + first_event
}
})
invisible(self)
},
#' @description
#' Pop a task from the queue and mark it as running.
#'
#' @param timeout (`numeric(1)`)\cr
#' Time to wait for task in seconds.
#' @param fields (`character()`)\cr
#' Fields to be returned.
pop_task = function(timeout = 1, fields = "xs") {
r = private$.connector
key = r$command(c("BLMPOP", timeout, 1, private$.get_key("queued_tasks"), "RIGHT"))[[2]][[1]]
if (is.null(key)) {
return(NULL)
}
self$write_hashes(worker_id = list(self$worker_id), keys = key)
# move key from queued to running
r$command(c("SADD", private$.get_key("running_tasks"), key))
task = self$read_hash(key = key, fields = fields)
task$key = key
task
},
#' @description
#' Save output of tasks and mark them as finished.
#'
#' @param keys (`character(1)`)\cr
#' Keys of the associated tasks.
#' @param yss (named `list()`)\cr
#' List of lists of named results.
#' @param extra (named `list()`)\cr
#' List of lists of additional information stored along with the results.
#'
#' @return (`Rush`)\cr
#' Invisible self.
finish_tasks = function(keys, yss, extra = NULL) {
assert_character(keys)
assert_list(yss, types = "list")
assert_list(extra, types = "list", null.ok = TRUE)
r = private$.connector
# write results to hashes
self$write_hashes(
ys = yss,
ys_extra = extra,
keys = keys
)
# move key from running to finished
# keys of finished tasks are stored in a list i.e. the are ordered by time
# each rush instance only needs to record how many results it has already seen
# to cheaply get the latest results and cache the finished tasks
# under some conditions a set would be more advantageous e.g. to check if a task is finished,
# but at the moment a list seems to be the better option
r$pipeline(
.commands = list(
c("SREM", private$.get_key("running_tasks"), keys),
c("RPUSH", private$.get_key("finished_tasks"), keys)
)
)
invisible(self)
},
#' @description
#' Mark tasks as failed and optionally save the condition objects
#'
#' @param keys (`character()`)\cr
#' Keys of the tasks to be moved.
#' Defaults to all queued tasks.
#' @param conditions (named `list()`)\cr
#' List of lists of conditions.
#' Defaults to `list(message = "Failed")`.
#'
#' @return (`Rush`)\cr
#' Invisible self.
fail_tasks = function(keys, conditions = NULL) {
assert_character(keys)
assert_list(conditions, types = "list", null.ok = TRUE)
r = private$.connector
conditions = conditions %??% list(list(message = "Task failed"))
# write condition to hash
self$write_hashes(condition = conditions, keys = keys)
is_running_task = as.logical(r$pipeline(
.commands = map(keys, function(key) c("SISMEMBER", private$.get_key("running_tasks"), key))
))
running_tasks = keys[is_running_task]
queued_tasks = keys[!is_running_task]
# move keys from running to failed
commands_running = map(running_tasks, function(key) {
c("SMOVE", private$.get_key("running_tasks"), private$.get_key("failed_tasks"), key)
})
# move keys from queued to failed
commands_queued = unlist(
map(queued_tasks, function(key) {
list(
c("LREM", private$.get_key("queued_tasks"), 1, key),
c("SADD", private$.get_key("failed_tasks"), key)
)
}),
recursive = FALSE
)
r$pipeline(.commands = c(commands_running, commands_queued))
invisible(self)
},
#' @description
#' Create queued tasks and add them to the queue.
#'
#' @param xss (list of named `list()`)\cr
#' Lists of arguments for the function e.g. `list(list(x1, x2), list(x1, x2)))`.
#' @param extra (`list()`)\cr
#' List of additional information stored along with the task e.g. `list(list(timestamp), list(timestamp)))`.
#'
#' @return (`character()`)\cr
#' Keys of the tasks.
push_tasks = function(xss, extra = NULL) {
assert_list(xss, types = "list")
assert_list(extra, types = "list", null.ok = TRUE)
r = private$.connector
lg$debug("Pushing %i task(s) to the queue", length(xss))
# write tasks to hashes
keys = self$write_hashes(
xs = xss,
xs_extra = extra
)
cmds = list(
c("RPUSH", private$.get_key("all_tasks"), keys),
c("LPUSH", private$.get_key("queued_tasks"), keys)
)
r$pipeline(.commands = cmds)
return(invisible(keys))
},
#' @description
#' Create running tasks.
#'
#' @param xss (list of named `list()`)\cr
#' Lists of arguments for the function e.g. `list(list(x1, x2), list(x1, x2)))`.
#' @param extra (`list`)\cr
#' List of additional information stored along with the task e.g. `list(list(timestamp), list(timestamp)))`.
#'
#' @return (`character()`)\cr
#' Keys of the tasks.
push_running_tasks = function(xss, extra = NULL) {
assert_list(xss, types = "list")
assert_list(extra, types = "list", null.ok = TRUE)
r = private$.connector
lg$debug("Pushing %i running task(s).", length(xss))
keys = self$write_hashes(xs = xss, xs_extra = extra, worker_id = list(self$worker_id))
r$command(c("SADD", private$.get_key("running_tasks"), keys))
r$command(c("RPUSH", private$.get_key("all_tasks"), keys))
return(invisible(keys))
},
#' @description
#' Create finished tasks.
#' See `$finish_tasks()` for moving existing tasks from running to finished.
#'
#' @param xss (list of named `list()`)\cr
#' Lists of arguments for the function e.g. `list(list(x1, x2), list(x1, x2)))`.
#' @param yss (list of named `list()`)\cr
#' Lists of results for the function e.g. `list(list(y1, y2), list(y1, y2)))`.
#' @param xss_extra (`list`)\cr
#' List of additional information stored along with the task e.g. `list(list(timestamp), list(timestamp)))`.
#' @param yss_extra (`list`)\cr
#' List of additional information stored along with the results e.g. `list(list(timestamp), list(timestamp)))`.
#'
#' @return (`character()`)\cr
#' Keys of the tasks.
push_finished_tasks = function(xss, yss, xss_extra = NULL, yss_extra = NULL) {
assert_list(xss, types = "list")
assert_list(yss, types = "list")
assert_list(xss_extra, types = "list", null.ok = TRUE)
assert_list(yss_extra, types = "list", null.ok = TRUE)
r = private$.connector
keys = self$write_hashes(xs = xss, ys = yss, xs_extra = xss_extra, ys_extra = yss_extra)
cmds = list(
c("RPUSH", private$.get_key("all_tasks"), keys),
c("RPUSH", private$.get_key("finished_tasks"), keys)
)
r$pipeline(.commands = cmds)
return(invisible(keys))
},
#' @description
#' Create failed tasks.
#' See `$fail_tasks()` for moving existing tasks from queued and running to failed.
#'
#' @param xss (list of named `list()`)\cr
#' Lists of arguments for the function e.g. `list(list(x1, x2), list(x1, x2)))`.
#' @param xss_extra (`list`)\cr
#' List of additional information stored along with the task e.g. `list(list(timestamp), list(timestamp)))`.
#' @param conditions (named `list()`)\cr
#' List of lists of conditions.
#'
#' @return (`character()`)\cr
#' Keys of the tasks.
push_failed_tasks = function(xss, xss_extra = NULL, conditions) {
assert_list(xss, types = "list")
assert_list(xss_extra, types = "list", null.ok = TRUE)
assert_list(conditions, types = "list")
r = private$.connector
# write condition to hash
keys = self$write_hashes(xs = xss, xs_extra = xss_extra, condition = conditions)
cmds = list(
c("RPUSH", private$.get_key("all_tasks"), keys),
c("SADD", private$.get_key("failed_tasks"), keys)
)
r$pipeline(.commands = cmds)
return(invisible(keys))
},
#' @description
#' Remove all tasks from the queue.
#' The state of the tasks is set to failed.
#'
#' @param keys (`character()`)\cr
#' Keys of the tasks to be moved.
#' Defaults to all queued tasks.
#' @param conditions (named `list()`)\cr
#' List of lists of conditions.
#'
#' @return (`Rush`)\cr
#' Invisible self.
empty_queue = function(keys = NULL, conditions = NULL) {
keys = keys %??% self$queued_tasks
if (length(keys)) {
conditions = conditions %??% list(list(message = "Removed from queue"))
self$fail_tasks(keys, conditions = conditions)
}
return(invisible(self))
},
#' @description
#' Fetch all tasks from the data base.
#'
#' @param fields (`character()`)\cr
#' Fields to be read from the hashes.
#' Defaults to `c("xs", "xs_extra", "worker_id", "ys", "ys_extra", "condition")`.
#'
#' @return `data.table()`\cr
#' Table of all tasks.
fetch_tasks = function(fields = c("xs", "ys", "xs_extra", "worker_id", "ys_extra", "condition")) {
keys = self$tasks
private$.fetch_tasks(keys, fields)
},
#' @description
#' Fetch queued tasks from the data base.
#'
#' @param fields (`character()`)\cr
#' Fields to be read from the hashes.
#' Defaults to `c("xs", "xs_extra")`.
#'
#' @return `data.table()`\cr
#' Table of queued tasks.
fetch_queued_tasks = function(fields = c("xs", "xs_extra")) {
keys = self$queued_tasks
private$.fetch_tasks(keys, fields)
},
#' @description
#' Fetch running tasks from the data base.
#'
#' @param fields (`character()`)\cr
#' Fields to be read from the hashes.
#' Defaults to `c("xs", "xs_extra", "worker_id")`.
#'
#' @return `data.table()`\cr
#' Table of running tasks.
fetch_running_tasks = function(fields = c("xs", "xs_extra", "worker_id")) {
keys = self$running_tasks
private$.fetch_tasks(keys, fields)
},
#' @description
#' Fetch failed tasks from the data base.
#'
#' @param fields (`character()`)\cr
#' Fields to be read from the hashes.
#' Defaults to `c("xs", "xs_extra", "worker_id", "condition"`.
#'
#' @return `data.table()`\cr
#' Table of failed tasks.
fetch_failed_tasks = function(fields = c("xs", "xs_extra", "worker_id", "condition")) {
keys = self$failed_tasks
private$.fetch_tasks(keys, fields)
},
#' @description
#' Fetch finished tasks from the data base.
#' Finished tasks are cached.
#'
#' @param fields (`character()`)\cr
#' Fields to be read from the hashes.
#' Defaults to `c("xs", "xs_extra", "worker_id", "ys", "ys_extra")`.
#'
#' @return `data.table()`\cr
#' Table of finished tasks.
fetch_finished_tasks = function(fields = c("worker_id", "xs", "ys", "xs_extra", "ys_extra", "condition")) {
keys = if (self$n_finished_tasks > nrow(private$.cached_tasks)) {
r = private$.connector
r$command(c("LRANGE", private$.get_key("finished_tasks"), nrow(private$.cached_tasks), -1))
}
private$.fetch_cached_tasks(keys, fields)
},
#' @description
#' Fetch tasks with different states from the data base.
#' If tasks with different states are to be queried at the same time,
#' this function prevents tasks from appearing twice.
#' This could be the case if a worker changes the state of a task while the tasks are being fetched.
#' Finished tasks are cached.
#'
#' @param fields (`character()`)\cr
#' Fields to be read from the hashes.
#' Defaults to `c("worker_id", "xs", "ys", "xs_extra", "ys_extra", "condition")`.
#' @param states (`character()`)\cr
#' States of the tasks to be fetched.
#' Defaults to `c("queued", "running", "finished", "failed")`.
fetch_tasks_with_state = function(
fields = c("worker_id", "xs", "ys", "xs_extra", "ys_extra", "condition"),
states = c("queued", "running", "finished", "failed")
) {
# nolint
r = private$.connector
assert_subset(states, c("queued", "running", "finished", "failed"), empty.ok = FALSE)
all_keys = private$.tasks_with_state(states, only_new_keys = TRUE)
data = imap(all_keys, function(keys, state) {
if (state == "finished") {
private$.fetch_cached_tasks(keys, fields)
} else {
private$.fetch_tasks(keys, fields)
}
})
data = rbindlist(data, use.names = TRUE, fill = TRUE, idcol = "state")
data[]
},
#' @description
#' Fetch new tasks that finished after the last call of this function.
#' Updates the cache of the finished tasks.
#' If `timeout` is set, blocks until new tasks are available or the timeout is reached.
#'
#' @param fields (`character()`)\cr
#' Fields to be read from the hashes.
#' @param timeout (`numeric(1)`)\cr
#' Time to wait for new results in seconds.
#' Defaults to `0` (no waiting).
#'
#' @return `data.table()`\cr
#' Table of latest results.
fetch_new_tasks = function(
fields = c("xs", "ys", "xs_extra", "worker_id", "ys_extra", "condition"),
timeout = 0
) {
assert_character(fields)
assert_number(timeout, lower = 0)
if (timeout > 0) {
lg$debug("Wait for new tasks for at most %s seconds", as.character(timeout))
start_time = Sys.time()
while (start_time + timeout > Sys.time()) {
if (self$n_finished_tasks > private$.n_seen_results) {
break
}
Sys.sleep(0.01)
}
}
# fetch finished tasks to populate cache
self$fetch_finished_tasks(fields)
# advance the seen counter by the actual number of newly cached rows,
n_new_results = nrow(private$.cached_tasks) - private$.n_seen_results
if (!n_new_results) {
return(data.table())
}
private$.n_seen_results = nrow(private$.cached_tasks)
# return only the new results from the cached data.table
tail(private$.cached_tasks, n_new_results)[]
},
#' @description
#' Reset the cache of the finished tasks.
#'
#' @return (`Rush`)\cr
#' Invisible self.
reset_cache = function() {
private$.cached_tasks = data.table()
private$.n_seen_results = 0
invisible(self)
},
#' @description
#' Wait until tasks are finished.
#' The function also unblocks when no worker is running or all tasks failed.
#'
#' @param keys (`character()`)\cr
#' Keys of the tasks to wait for.
#' @param detect_lost_workers (`logical(1)`)\cr
#' Whether to detect failed tasks.
#' Comes with an overhead.
wait_for_tasks = function(keys, detect_lost_workers = FALSE) {
assert_character(keys, min.len = 1)
assert_flag(detect_lost_workers)
lg$debug("Wait for %i task(s)", length(keys))
while (any(keys %nin% c(self$finished_tasks, self$failed_tasks)) && self$n_running_workers > 0) {
if (detect_lost_workers) {
self$detect_lost_workers()
}
Sys.sleep(0.01)
}
invisible(self)
},
#' @description
#' Writes R objects to Redis hashes.
#' The function takes the vectors in `...` as input and writes each element as a field-value pair to a new hash.
#' The name of the argument defines the field into which the serialized element is written.
#' For example, `xs = list(list(x1 = 1, x2 = 2), list(x1 = 3, x2 = 4))` writes
#' `serialize(list(x1 = 1, x2 = 2))` at field `xs` into a hash
#' and `serialize(list(x1 = 3, x2 = 4))` at field `xs` into another hash.
#' The function can iterate over multiple vectors simultaneously.
#' For example, `xs = list(list(x1 = 1, x2 = 2), list(x1 = 3, x2 = 4)),
#' ys = list(list(y = 3), list(y = 7))` creates two hashes with the fields `xs` and `ys`.
#' All value lists must either have the same length (the number of hashes) or length 1,
#' in which case the value is broadcast across all hashes.
#' Other length mismatches raise an error.
#' Both lists and atomic vectors are supported.
#' Arguments that are `NULL` are ignored.
#'
#' @param ... (named `list()`)\cr
#' Lists to be written to the hashes.
#' The names of the arguments are used as fields.
#' @param .values (named `list()`)\cr
#' Lists to be written to the hashes.
#' The names of the list are used as fields.
#' @param keys (character())\cr
#' Keys of the hashes.
#' If `NULL` new keys are generated.
#'
#' @return (`character()`)\cr
#' Keys of the hashes.
write_hashes = function(..., .values = list(), keys = NULL) {
# discard empty lists
values = discard(c(list(...), .values), function(l) !length(l))
fields = names(values)
lens = map_int(values, length)
if (is.null(keys)) {
n_hashes = if (length(lens)) max(lens) else 0L
keys = UUIDgenerate(n = n_hashes)
} else {
assert_character(keys)
n_hashes = length(keys)
}
# every value list must be length 1 (broadcast) or length n_hashes
if (any(lens != 1L & lens != n_hashes)) {
error_input(
"All value lists must have length 1 or %i (the number of hashes); got %s",
n_hashes,
str_collapse(sprintf("%s=%i", fields, lens))
)
}
lg$debug("Writing %i hash(es) with %i field(s)", length(keys), length(fields))
# construct list of redis commands to write hashes
# one hash per iteration
cmds = pmap(c(list(key = keys), values), function(key, ...) {
# serialize value of field
bin_values = map(list(...), redux::object_to_bin)
lg$debug("Serializing %i value(s) to %s", length(bin_values), format(Reduce(`+`, map(bin_values, object.size))))
# merge fields and values alternatively
# HSET expects `c(field1, value1, field2, value2, ...)`
# c and rbind are fastest option in R
# data is not copied
c("HSET", key, c(rbind(fields, bin_values)))
})
private$.connector$pipeline(.commands = cmds)
invisible(keys)
},
#' @description
#' Reads R Objects from Redis hashes.
#' The function reads the field-value pairs of the hashes stored at `keys`.
#' The values of a hash are deserialized and combined to a list.
#' If `flatten` is `TRUE`, the values are flattened to a single list e.g.
#' `list(xs = list(x1 = 1, x2 = 2), ys = list(y = 3))` becomes `list(x1 = 1, x2 = 2, y = 3)`.
#' The reading functions combine the hashes to a table where the names of the inner lists are the column names.
#' For example, `xs = list(list(x1 = 1, x2 = 2), list(x1 = 3, x2 = 4)),
#' ys = list(list(y = 3), list(y = 7))` becomes
#' `data.table(x1 = c(1, 3), x2 = c(2, 4), y = c(3, 7))`.
#'
#' @param keys (`character()`)\cr
#' Keys of the hashes.
#' @param fields (`character()`)\cr
#' Fields to be read from the hashes.
#' @param flatten (`logical(1)`)\cr
#' Whether to flatten the list.
#'
#' @return (list of `list()`)\cr
#' The outer list contains one element for each key.
#' The inner list is the combination of the lists stored at the different fields.
read_hashes = function(keys, fields, flatten = TRUE) {
lg$debug("Reading %i hash(es) with %i field(s)", length(keys), length(fields))
# construct list of redis commands to read hashes
cmds = map(keys, function(key) c("HMGET", key, fields))
# list of hashes
# first level contains hashes
# second level contains fields
# the values of the fields are serialized lists and atomics
# List
# Hash 1
# Field 1 (serialized list or atomic)
# Field 2
# Hash 2
# Field 1
# Field 2
hashes = private$.connector$pipeline(.commands = cmds)
if (flatten) {
# unserialize elements / fields of the second level
# flatten elements / fields of the second level to one list
# e.g. list(hash1 = list(field1 = list(x1 = 1, x2 = 2), field2 = list(y = 3)))
# becomes list(hash1 = list(x1 = 1, x2 = 2, y = 3))
# using mapply instead of pmap is faster
map(hashes, function(hash) {
result = unlist(
.mapply(
function(bin_value, field) {
# unserialize value
value = safe_bin_to_object(bin_value)
# wrap atomic values in list and name by field
if (is.atomic(value) && !is.null(value)) {
value = setNames(list(value), field)
}
value
},
list(bin_value = hash, field = fields),
NULL
),
recursive = FALSE
)
# wrap vectors in list to create list columns
# rbindlist would expand a vector into multiple rows
lens = lengths(result)
if (any(lens > 1L)) {
idx = lens > 1L
result[idx] = lapply(result[idx], list)
}
result
})
} else {
# unserialize elements of the second level
# e.g. list(hash1 = list(field1 = list(x1 = 1, x2 = 2), field2 = list(y = 3)))
# becomes list(hash1 = list(field1 = list(x1 = 1, x2 = 2), field2 = list(y = 3)))
map(hashes, function(hash) {
setNames(
map(hash, function(bin_value) {
#nolint
safe_bin_to_object(bin_value)
}),
fields
)
})
}
},
#' @description
#' Reads a single Redis hash and returns the values as a list named by the fields.
#'
#' @param key (`character(1)`)\cr
#' Key of the hash.
#' @param fields (`character()`)\cr
#' Fields to be read from the hash.
#'
#' @return (list of `list()`)\cr
#' The outer list contains one element for each key.
#' The inner list is the combination of the lists stored at the different fields.
read_hash = function(key, fields) {
lg$debug("Reading hash with %i field(s)", length(fields))
setNames(map(private$.connector$HMGET(key, fields), safe_bin_to_object), fields)
},
#' @description
#' Checks whether tasks have the status `"running"`.
#'
#' @param keys (`character()`)\cr
#' Keys of the tasks.
is_running_task = function(keys) {
r = private$.connector
if (!length(keys)) {
return(logical(0))
}
as.logical(r$command(c("SMISMEMBER", private$.get_key("running_tasks"), keys)))
},
#' @description
#' Checks whether tasks have the status `"failed"`.
#'
#' @param keys (`character()`)\cr
#' Keys of the tasks.
is_failed_task = function(keys) {
r = private$.connector
if (!length(keys)) {
return(logical(0))
}
as.logical(r$command(c("SMISMEMBER", private$.get_key("failed_tasks"), keys)))
},
#' @description
#' Returns keys of requested states.
#'
#' @param states (`character()`)\cr
#' States of the tasks.
#'
#' @return (Named list of `character()`).
tasks_with_state = function(states) {
r = private$.connector
assert_subset(states, c("queued", "running", "finished", "failed"))
private$.tasks_with_state(states)
},
#' @description
#' Deprecated method.
#' Use `$finish_tasks()` instead.
#'
#' @param keys (`character()`)\cr
#' Keys of the associated tasks.
#' @param yss (named `list()`)\cr
#' List of lists of named results.
#' @param extra (named `list()`)\cr
#' List of lists of additional information stored along with the results.
#'
#' @return (`Rush`)\cr
#' Invisible self.
push_results = function(keys, yss, extra = NULL) {
warn_deprecated("$push_results() is deprecated. Use $finish_tasks() instead.")
self$finish_tasks(keys, yss, extra = extra)
},
#' @description
#' Deprecated method.
#' Use `$fail_tasks()` instead.
#'
#' @param keys (`character()`)\cr
#' Keys of the associated tasks.
#' @param conditions (`list()`)\cr
#' List of conditions.
#' @return (`Rush`)\cr
#' Invisible self.
push_failed = function(keys, conditions) {
warn_deprecated("$push_failed() is deprecated. Use $fail_tasks() instead.")
self$fail_tasks(keys, conditions = conditions)
}
),
active = list(
#' @field network_id (`character(1)`)\cr
#' Identifier of the rush network.
network_id = function(rhs) {
assert_ro_binding(rhs)
private$.network_id
},
#' @field config ([redux::redis_config])\cr
#' Redis configuration options.
config = function(rhs) {
if (missing(rhs)) {
return(private$.config)
}
assert_class(rhs, "redis_config")
private$.config = rhs
},
#' @field connector ([redux::redis_api])\cr
#' Returns a connection to Redis.
connector = function(rhs) {
assert_ro_binding(rhs)
private$.connector
},
#' @field n_workers (`integer(1)`)\cr
#' Number of workers.
n_workers = function(rhs) {
assert_ro_binding(rhs)
r = private$.connector
as.integer(r$SCARD(private$.get_key("worker_ids"))) %??% 0
},
#' @field n_running_workers (`integer(1)`)\cr
#' Number of running workers.
n_running_workers = function(rhs) {
assert_ro_binding(rhs)
r = private$.connector
as.integer(r$SCARD(private$.get_key("running_worker_ids"))) %??% 0
},
#' @field n_terminated_workers (`integer(1)`)\cr
#' Number of terminated workers.
n_terminated_workers = function(rhs) {
assert_ro_binding(rhs)
r = private$.connector
as.integer(r$SCARD(private$.get_key("terminated_worker_ids"))) %??% 0
},
#' @field worker_ids (`character()`)\cr
#' Ids of workers.
worker_ids = function() {
r = private$.connector
unlist(r$SMEMBERS(private$.get_key("worker_ids")))
},
#' @field running_worker_ids (`character()`)\cr
#' Ids of running workers.
running_worker_ids = function() {
r = private$.connector
unlist(r$SMEMBERS(private$.get_key("running_worker_ids")))
},
#' @field terminated_worker_ids (`character()`)\cr
#' Ids of terminated workers.
terminated_worker_ids = function() {
r = private$.connector
unlist(r$SMEMBERS(private$.get_key("terminated_worker_ids")))
},
#' @field tasks (`character()`)\cr
#' Keys of all tasks.
tasks = function() {
r = private$.connector
unlist(r$LRANGE(private$.get_key("all_tasks"), 0, -1))
},
#' @field queued_tasks (`character()`)\cr
#' Keys of queued tasks.
queued_tasks = function() {
r = private$.connector
unlist(r$LRANGE(private$.get_key("queued_tasks"), 0, -1))
},
#' @field running_tasks (`character()`)\cr
#' Keys of running tasks.
running_tasks = function() {
r = private$.connector
unlist(r$SMEMBERS(private$.get_key("running_tasks")))
},
#' @field finished_tasks (`character()`)\cr
#' Keys of finished tasks.
finished_tasks = function() {
r = private$.connector
unlist(r$LRANGE(private$.get_key("finished_tasks"), 0, -1))
},
#' @field failed_tasks (`character()`)\cr
#' Keys of failed tasks.
failed_tasks = function() {
r = private$.connector
unlist(r$SMEMBERS(private$.get_key("failed_tasks")))
},
#' @field n_queued_tasks (`integer(1)`)\cr
#' Number of queued tasks.
n_queued_tasks = function() {
r = private$.connector
as.integer(r$LLEN(private$.get_key("queued_tasks"))) %??% 0
},
#' @field n_running_tasks (`integer(1)`)\cr
#' Number of running tasks.
n_running_tasks = function() {
r = private$.connector
as.integer(r$SCARD(private$.get_key("running_tasks"))) %??% 0
},
#' @field n_finished_tasks (`integer(1)`)\cr
#' Number of finished tasks.
n_finished_tasks = function() {
r = private$.connector
as.integer(r$LLEN(private$.get_key("finished_tasks"))) %??% 0
},
#' @field n_failed_tasks (`integer(1)`)\cr
#' Number of failed tasks.
n_failed_tasks = function() {
r = private$.connector
as.integer(r$SCARD(private$.get_key("failed_tasks"))) %??% 0
},
#' @field n_tasks (`integer(1)`)\cr
#' Number of all tasks.
n_tasks = function() {
r = private$.connector
as.integer(r$LLEN(private$.get_key("all_tasks"))) %??% 0
},
#' @field worker_info ([data.table::data.table()])\cr
#' Contains information about the workers.
worker_info = function(rhs) {
assert_ro_binding(rhs)
if (!self$n_workers) {
return(data.table())
}
r = private$.connector
fields = c("worker_id", "pid", "hostname", "heartbeat")
worker_info = set_names(
rbindlist(map(self$worker_ids, function(worker_id) {
r$command(c("HMGET", private$.get_key(worker_id), fields))
})),
fields
)
# fix type
worker_info[, pid := as.integer(pid)][]
worker_info[, heartbeat := heartbeat != "NA"][]
# get worker states as atomic operation
r$MULTI()
r$SMEMBERS(private$.get_key("running_worker_ids"))
r$SMEMBERS(private$.get_key("terminated_worker_ids"))
res = r$EXEC()
worker_ids = list(
running = data.table(worker_id = unlist(res[[1]])),
terminated = data.table(worker_id = unlist(res[[2]]))
)
worker_states = rbindlist(worker_ids, idcol = "state", use.names = TRUE, fill = TRUE)
worker_info[worker_states, , on = "worker_id"]
}
),
private = list(
.network_id = NULL,
.config = NULL,
.connector = NULL,
# cache for finished tasks
.cached_tasks = data.table(),
# counter of the seen results for the latest results methods
.n_seen_results = 0,
# counter for printed logs
# zero based
.log_counter = list(),
# prefix key with instance id
.get_key = function(key) {
sprintf("%s:%s", private$.network_id, key)
},
# prefix key with instance id and worker id
.get_worker_key = function(key, worker_id = NULL) {
worker_id = worker_id %??% self$worker_id
sprintf("%s:%s:%s", private$.network_id, worker_id, key)
},
# push worker config to redis
.push_worker_config = function(
worker_loop = NULL,
...,
packages = NULL
) {
assert_function(worker_loop)
worker_loop = crate(worker_loop, .parent = topenv(environment(worker_loop)))
dots = list(...)
assert_character(packages, null.ok = TRUE)
r = private$.connector
lg$debug("Pushing worker config to Redis")
# arguments needed for initializing the worker
start_args = list(
worker_loop = worker_loop,
worker_loop_args = dots,
packages = c("rush", packages)
)
# serialize and push arguments to redis
# the serialize functions warns that a required package may not be available when loading the start args
# we ensure that the package is available
bin_start_args = suppressWarnings(redux::object_to_bin(start_args))
# check if worker configuration exceeds the limit supported by Redis
max_object_size = getOption("rush.max_object_size", 512)
if (as.numeric(object.size(bin_start_args)) / (1024^2) > max_object_size) {
if (is.null(rush_env$large_objects_path)) {
error_config(
paste(
"Worker configuration exceeds the %s MiB limit supported by Redis.",
"Use a path to store large objects on disk instead."
),
max_object_size
)
} else {
lg$debug("Worker configuration exceeds %s MiB. Writing to disk instead.", max_object_size)
bin_start_args = redux::object_to_bin(store_large_object(start_args, path = rush_env$large_objects_path))
}
}
lg$debug("Serializing worker configuration to %s", format(object.size(bin_start_args)))
r$command(list("SET", private$.get_key("start_args"), bin_start_args))
},
# get task keys
# finished tasks keys can be restricted to uncached tasks
.tasks_with_state = function(states, only_new_keys = FALSE) {
r = private$.connector
# optionally limit finished tasks to uncached tasks
start_finished_tasks = if (only_new_keys) nrow(private$.cached_tasks) else 0
# get keys of tasks with different states in one transaction
r$MULTI()
if ("queued" %in% states) {
r$LRANGE(private$.get_key("queued_tasks"), 0, -1)
}
if ("running" %in% states) {
r$SMEMBERS(private$.get_key("running_tasks"))
}
if ("finished" %in% states) {
r$LRANGE(private$.get_key("finished_tasks"), start_finished_tasks, -1)
}
if ("failed" %in% states) {
r$SMEMBERS(private$.get_key("failed_tasks"))
}
keys = r$EXEC()
keys = map(keys, unlist)
states_order = c("queued", "running", "finished", "failed")
set_names(keys, states_order[states_order %in% states])
},
# fetch tasks
.fetch_tasks = function(keys, fields) {
r = private$.connector
assert_character(fields)
if (!length(keys)) {
return(data.table())
}
data = self$read_hashes(keys, fields)
lg$debug("Fetching %i task(s)", length(data))
tab = rbindlist(data, use.names = TRUE, fill = TRUE)
tab[, keys := unlist(keys)]
tab[]
},
# fetch and cache tasks
.fetch_cached_tasks = function(new_keys, fields, reset_cache = FALSE) {
r = private$.connector
assert_flag(reset_cache)
if (reset_cache) {
private$.cached_tasks = data.table()
}
lg$debug("Reading %i cached task(s)", nrow(private$.cached_tasks))
if (length(new_keys)) {
lg$debug("Caching %i new task(s)", length(new_keys))
# rbindlist only the new results and append to cached data.table
data = self$read_hashes(new_keys, fields)
new_tab = rbindlist(data, use.names = TRUE, fill = TRUE)
if (nrow(new_tab)) {
new_tab[, keys := unlist(new_keys)]
}
private$.cached_tasks = rbindlist(list(private$.cached_tasks, new_tab), use.names = TRUE, fill = TRUE)
}
lg$debug("Fetching %i task(s)", nrow(private$.cached_tasks))
private$.cached_tasks[]
}
)
)
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