Nothing
rysgran.hist <-
function (data, subset = NULL, which = NULL, ordered=TRUE)
{
phi <- data[1, ]
if (sum(phi) > 550){
phi<-(-log2(phi/1000))
phi<-round(phi,digits=1)
}
phi <- as.vector(phi, mode = "numeric")
phi <- factor(phi)
Weight <- as.matrix(data[-1,])
colnames(Weight) <- phi
Sum <- numeric(nrow(Weight))
for(i in 1:length(Sum)) Sum[i] <- sum(Weight[i,])
m <- matrix(nrow = nrow(Weight), ncol = ncol(Weight))
for(i in 1:nrow(m))
{
for(j in 1:ncol(m)) m[i,j] <- Weight[i,j]*100
}
Percent <- matrix(nrow = nrow(Weight), ncol = ncol(Weight))
for(i in 1:nrow(Percent)) Percent[i,] <- m[i,]/Sum[i]
x <- rep(phi, times = nrow(Percent))
Percent <- t(Percent)
y <- as.vector(Percent, mode = "numeric")
g <- rep(rownames(Weight), each = nlevels(x))
i<-factor(g, levels = rownames(Weight))
sub <- rep(subset, each = nlevels(x))
if (is.null(subset))
{
if (ordered == FALSE)
{
bc <- barchart(y ~ x | g,
horiz = FALSE, origin = 0,
ylab = "%", xlab = expression(paste(, phi, )), col = "black",
strip = strip.custom(bg = "grey90"),
scales = list(x = list(rot = 90)),
as.table=TRUE,
panel = function(...)
{
panel.grid(h = -1, v = 0, lwd = 1.2)
panel.barchart(..., border = "transparent")
})
return(bc)
}
else
{
bc <- barchart(y ~ x | i,
horiz = FALSE, origin = 0,
ylab = "%", xlab = expression(paste(, phi, )), col = "black",
strip = strip.custom(bg = "grey90"),
scales = list(x = list(rot = 90)),
as.table=TRUE,
panel = function(...)
{
panel.grid(h = -1, v = 0, lwd = 1.2)
panel.barchart(..., border = "transparent")
})
return(bc)
}
}
else
{
if (ordered == FALSE)
{
bc <- barchart(y ~ x | g, subset = (sub == which),
horiz = FALSE, origin = 0,
ylab = "%", xlab = expression(paste(, phi, )), col = "black",
strip = strip.custom(bg = "grey90"),
scales = list(x = list(rot = 90)),
as.table=TRUE,
panel = function(...)
{
panel.grid(h = -1, v = 0, lwd = 1.2)
panel.barchart(..., border = "transparent")
})
return(bc)
}
else
{
bc <- barchart(y ~ x | i, subset = (sub == which),
horiz = FALSE, origin = 0,
ylab = "%", xlab = expression(paste(, phi, )), col = "black",
strip = strip.custom(bg = "grey90"),
scales = list(x = list(rot = 90)),
as.table=TRUE,
panel = function(...)
{
panel.grid(h = -1, v = 0, lwd = 1.2)
panel.barchart(..., border = "transparent")
})
return(bc)
}
}
}
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