check_ex_infusion_exstdtc_exendtc: Check that an infusion drug has same start/end exposure...

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check that an infusion drug has same start/end exposure dates, also including missing start/end dates

Description

This check identifies that an infusion drug has same EXSTDTC and EXENDTC dateparts. If time is available for both dates, also check that end time is after start time. Missing start/end dates are also included.

Usage

check_ex_infusion_exstdtc_exendtc(EX)

Arguments

EX	Exposure SDTM dataset with variables USUBJID,EXTRT,EXSTDTC,EXENDTC,EXROUTE

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Anastasiia Khmelnytska, Stella Banjo(HackR 2021)

Examples

EX <- data.frame(
 STUDYID = 1,
 USUBJID = 1:12,
 EXTRT = "SOME DRUG",
 EXROUTE = "INTRAVENOUS",
 EXSTDTC = c("2017-01-01","2017-01-02","2017-01-01T14:36","2015","2017-02","2017"      ,""    ,
             "2017"   ,"2017-01-01T14:26","2017-01-01T14:26","2017-01-01T14","2017-01-01T14:26:01")
             ,
 EXENDTC = c("2017-01-01","2017-01-03","2017-01-01T14:35","2017","2017-01","2016-01-01","2000",
             "2017-02","2017-01-01"      ,"2017-01","2017-01-01T13","2017-01-02T14:26:02")
             ,
 EXOCCUR = "Y",
 VISIT = "CYCLE 1 DAY 1",
 stringsAsFactors=FALSE
)

 check_ex_infusion_exstdtc_exendtc(EX)

 EX2 <- data.frame(
 STUDYID = 1,
 USUBJID = 1:4,
 EXTRT = "SOME DRUG",
 EXROUTE = "INTRAVENOUS",
 EXSTDTC = c("2017-01-03", "", "2017-02-01T14:26", ""),
 EXENDTC = c("", "2017-02-03", "", "2017-02-02T14:26:02"),
 EXOCCUR = "Y",
 VISIT = "CYCLE 1 DAY 1",
 stringsAsFactors = FALSE
 )

 check_ex_infusion_exstdtc_exendtc(EX2)

 EX3 <- data.frame(
     STUDYID = 1,
     USUBJID = 1:3,
     EXTRT = "SOME DRUG",
     EXROUTE = "INTRAVENOUS",
     EXSTDTC = c("2017-01-01", "2017-01-01T14:26", "2017-01-01T14:26"),
     EXENDTC = c("2017-01-01", "2017-01-01", "2017-01"),
     EXOCCUR = "Y",
     VISIT = "CYCLE 1 DAY 1",
     stringsAsFactors=FALSE
 )

 check_ex_infusion_exstdtc_exendtc(EX3)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.