check_lb_lbstnrlo_lbstnrhi: Check for missing lab reference ranges (LBSTNRLO, LBSTNRHI)

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check for missing lab reference ranges (LBSTNRLO, LBSTNRHI)

Description

This check looks for missing lab reference ranges (LBSTNRLO, LBSTNRHI) in standard units when numeric result in standard unit (LBSTRESN) is not missing and returns a data frame

Usage

check_lb_lbstnrlo_lbstnrhi(DM, LB)

Arguments

DM	DM SDTM dataset with variable USUBJID, SITEID
LB	Lab SDTM dataset with variables USUBJID, LBTEST, LBSTRESN, LBSTNRLO, LBSTNRHI

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Lei Zhao

Examples

LB <- data.frame(
USUBJID = "1",
LBTEST = "Albumin",
LBSTRESN = 1:10,
LBSTNRLO = 1:10,
LBSTNRHI = 1:10,
stringsAsFactors=FALSE
)

LB$LBSTNRLO[1]=""
LB$LBSTNRLO[2]="NA"
LB$LBSTNRLO[3]=NA
LB$LBSTNRHI[3]=""
LB$LBSTNRHI[4]="NA"
LB$LBSTNRHI[5]=NA

DM <- data.frame(
USUBJID = "1",
SITEID = "123456",
stringsAsFactors=FALSE
)

check_lb_lbstnrlo_lbstnrhi(DM, LB)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.