check_oe_sc_lat_count_fingers: Check if Post Treatment Count Fingers in Study Eye laterality...

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check if Post Treatment Count Fingers in Study Eye laterality does not match with Subject Characteristics Study Eye laterality

Description

Check If Post Treatment Count Fingers in Study Eye is done on the actual Study eye by comparing laterality from OE domain with SC domain. Check is ignored if Post Treatment Count Fingers is not collected in study as it is quite common for EP studies

Usage

check_oe_sc_lat_count_fingers(OE, SC)

Arguments

OE	Ophthalmic Examination Dataset for Ophtho Study with variables USUBJID, OECAT, OELAT, VISIT, OEDTC, OETEST, OELOC, OESTAT (if present)
SC	Subject Characteristics Dataset for Ophtho Study with variables USUBJID, SCTEST, SCTESTCD, SCCAT, SCORRES, SCDTC

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Monarch Shah (HackR 2021 Team Eye)

See Also

Other OPHTH: check_ae_aelat(), check_cm_cmlat_prior_ocular(), check_cm_cmlat(), check_oe_bcva_1m_late_early_tot(), check_oe_bcva_4m_late_early_tot(), check_oe_bcva_4m_vs_1m_req(), check_oe_bcva_tot_mismatch(), check_pr_prlat(), check_sc_dm_eligcrit(), check_sc_dm_seyeselc()

Examples

sc <- data.frame(USUBJID  = c(1,1,1,2,2,2),
                 SCTEST   = c("Eye Meeting Eligibility Criteria",
                              "Focus of Study-Specific Interest",
                              " ",
                              "Eye Meeting Eligibility Criteria",
                              "Focus of Study-Specific Interest",
                              " "),
                 SCTESTCD = c("ELIGEYE", "FOCID", "", "ELIGEYE", "FOCID", ""),
                 SCCAT    = c("STUDY EYE SELECTION", "STUDY EYE SELECTION", "",
                              "STUDY EYE SELECTION", "STUDY EYE SELECTION", ""),
                 SCORRES  = c("LEFT", "OS", "", "RIGHT", "OD", ""),
                 SCDTC    = rep("2021-01-01", 6),
                 stringsAsFactors = FALSE)

oe <- data.frame(USUBJID = c(1,1,1,1,1,2,2,2,2,2,2),
                 OECAT  = rep("SAFETY ASSESSMENT OF LOW VISION", 11),
                 OELOC   = rep("Eye", 11),
                 OELAT   = c("LEFT", "Left", "left", "LEFT", "LEFT",
                             "RIGHT", "right", "right", "RIGHT", "RIGHT", "right"),
                 OEDY  = c(1, 28, 56, 84, 112, 1, 28, 56, 84, 112, 140),
                 VISIT   = c("Week 1", "Week 4", "Week 8", "Week 12", "Week 16",
                             "Week 1", "Week 4", "Week 8", "Week 12", "Week 16", "Week 20"),
                 OEDTC = c("2021-01-01", "2021-02-01", "2021-03-01", "2021-04-01", "2021-05-01",
                           "2021-01-01", "2021-02-01", "2021-03-01", "2021-04-01", "2021-05-01",
                           "2021-06-01"),
                 OETEST = c("A", "B", "C", "D", "E", "A", "B", "C", "D", "E", "F"),
                 stringsAsFactors=FALSE)

check_oe_sc_lat_count_fingers(SC=sc, OE=oe)

sc <- data.frame(USUBJID  = c(1,1,1,2,2,2),
                 SCTEST   = c("Eye Meeting Eligibility Criteria",
                              "Focus of Study-Specific Interest",
                              " ",
                              "Eye Meeting Eligibility Criteria",
                              "Focus of Study-Specific Interest",
                              " "),
                 SCTESTCD = c("ELIGEYE", "FOCID", "", "ELIGEYE", "FOCID", ""),
                 SCCAT    = c("STUDY EYE SELECTION", "STUDY EYE SELECTION", "",
                              "STUDY EYE SELECTION", "STUDY EYE SELECTION", ""),
                 SCORRES  = c("LEFT", "OS", "", "RIGHT", "OD", ""),
                 SCDTC    = rep("2021-01-01", 6),
                 stringsAsFactors = FALSE)

oe <- data.frame(USUBJID = c(1,1,1,1,1,2,2,2,2,2,2),
                 OECAT  = rep("SAFETY ASSESSMENT OF LOW VISION", 11),
                 OELOC   = rep("Eye", 11),
                 OELAT   = c("LEFT", "Left", "left", "LEFT", "right", "RIGHT",
                             "right", "right", "RIGHT", "RIGHT", "left"),
                 OEDY  = c(1, 28, 56, 84, 112, 1, 28, 56, 84, 112, 140),
                 VISIT   = c("Week 1", "Week 4", "Week 8", "Week 12", "Week 16",
                             "Week 1", "Week 4", "Week 8", "Week 12", "Week 16",
                             "Week 20"),
                 OEDTC = c("2021-01-01", "2021-02-01", "2021-03-01", "2021-04-01", "2021-05-01",
                           "2021-01-01", "2021-02-01", "2021-03-01", "2021-04-01", "2021-05-01",
                           "2021-06-01"),
                 OETEST = c("A", "B", "C", "D", "E", "A", "B", "C", "D", "E", "F"),
                 stringsAsFactors=FALSE)

check_oe_sc_lat_count_fingers(SC=sc, OE=oe)

sc <- data.frame(USUBJID  = c(1,1,1,2,2,2,3),
                 SCTEST   = c("Eye Meeting Eligibility Criteria",
                              "Focus of Study-Specific Interest",
                              " ",
                              "Eye Meeting Eligibility Criteria",
                              "Focus of Study-Specific Interest",
                              " ",
                              "Focus of Study-Specific Interest"),
                 SCTESTCD = c("ELIGEYE", "FOCID", "", "ELIGEYE", "FOCID", "", "FOCID"),
                 SCCAT    = c("STUDY EYE SELECTION", "STUDY EYE SELECTION", "",
                              "STUDY EYE SELECTION", "STUDY EYE SELECTION",
                              "", "STUDY EYE SELECTION"),
                 SCORRES  = c("LEFT", "OS", "", "RIGHT", "OD", "", "OS"),
                 SCDTC    = "2021-01-01",
                 stringsAsFactors = FALSE)

oe <- data.frame(USUBJID = c(1,1,1,1,1,2,2,2,2,2,2),
                 OESTAT  = c("","","","","","","","","","", "not DONE"),
                 OECAT  = "SAFETY ASSESSMENT OF LOW VISION",
                 OELOC   = "Eye",
                 OELAT   = c("LEFT", "Left", "left", "LEFT", "right", "RIGHT",
                             "right", "right", "RIGHT", "RIGHT", "left"),
                 OEDY  = c(1, 28, 56, 84, 112, 1, 28, 56, 84, 112, 140),
                 VISIT   = c("Week 1", "Week 4", "Week 8", "Week 12", "Week 16",
                             "Week 1", "Week 4", "Week 8", "Week 12", "Week 16",
                             "Week 20"),
                 OEDTC = c("2021-01-01", "2021-02-01", "2021-03-01", "2021-04-01", "2021-05-01",
                           "2021-01-01", "2021-02-01", "2021-03-01", "2021-04-01", "2021-05-01",
                           "2021-06-01"),
                 OETEST = c("A", "B", "C", "D", "E", "A", "B", "C", "D", "E", "F"),
                 stringsAsFactors=FALSE)

check_oe_sc_lat_count_fingers(SC=sc, OE=oe)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.