check_qs_qsdtc_visit_ordinal_error: Check that all QS dates are duplicated or earlier than last...

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check that all QS dates are duplicated or earlier than last visit's (possible datetime data entry error)

Description

This check identifies QSDTC values that are duplicated or earlier than last visit's. Unscheduled visits are excluded.

Usage

check_qs_qsdtc_visit_ordinal_error(QS)

Arguments

QS	SDTM dataset with variables USUBJID, QSCAT, QSORRES, VISITNUM, VISIT, QSDTC

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Simon Luo

Examples

# no case
QS1 <- data.frame(USUBJID = c(rep(101, 5), rep(102, 5)),
                QSCAT = "DLQI",
                QSDTC = rep(c("2017-01-01T08:25", "2017-01-05T09:25",
                 "2017-01-15T10:25","2017-01-20T08:25","2017-01-25T08:25"), 2),
                VISITNUM = rep(1:5,2),
                VISIT = rep(c( "Visit 1", "Visit 2", "Visit 3", "UNSCheduled!!!","VIsit 5"), 2),
                stringsAsFactors = FALSE)

QS2 = QS1
QS2$QSCAT = "SKINDEX-29"

QS <- rbind(QS1, QS2)
check_qs_qsdtc_visit_ordinal_error(QS)

# adding cases with earlier date
QS$QSDTC[QS$USUBJID == 101 & QS$VISIT == "Visit 3"] <- "2017-01-10T08:25"
QS$QSDTC[QS$USUBJID == 102 & QS$VISIT == "Visit 2"] <- "2017-01-01T06:25"
check_qs_qsdtc_visit_ordinal_error(QS)

# adding cases with duplicated date
QS$QSDTC[QS$USUBJID == 102 & QS$VISIT == "Visit 3"] <- "2017-01-01T06:25"
 check_qs_qsdtc_visit_ordinal_error(QS)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.