check_sc_dm_eligcrit: Check SC Eye Meeting Eligibility Criteria assignments among...

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check SC Eye Meeting Eligibility Criteria assignments among DM patients

Description

Check if SC.SCCAT = "STUDY EYE SELECTION" and SC.SCTESTCD = "ELIGEYE", then SC.SCORRES should have "OS", "OD", or "OU" values. Flag if subject is in DM and without an associated SC.SCORRES value or the ELIGEYE Eye Meeting Eligibility Criteria value is not "OS", "OD", or "OU".

Usage

check_sc_dm_eligcrit(DM, SC)

Arguments

DM	Subject Demographics SDTM dataset with variable USUBJID
SC	Subject Characteristics SDTM dataset for Ophtho Study with variables USUBJID, SCTESTCD, SCTEST, SCCAT, SCORRES, SCDTC

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Monarch Shah (HackR 2021 Team Eye)

See Also

Other OPHTH: check_ae_aelat(), check_cm_cmlat_prior_ocular(), check_cm_cmlat(), check_oe_bcva_1m_late_early_tot(), check_oe_bcva_4m_late_early_tot(), check_oe_bcva_4m_vs_1m_req(), check_oe_bcva_tot_mismatch(), check_oe_sc_lat_count_fingers(), check_pr_prlat(), check_sc_dm_seyeselc()

Examples

dm <- data.frame(USUBJID = c(1,2))
sc <- data.frame(USUBJID  = c(1,1,1,2,2,2),
                 SCTEST   = c("Eye Meeting Eligibility Criteria",
                              "Focus of Study-Specific Interest",
                              " ",
                              "Eye Meeting Eligibility Criteria",
                              "Focus of Study-Specific Interest", " "),
                 SCTESTCD = c("ELIGEYE", "FOCID", "", "ELIGEYE", "FOCID", ""),
                 SCCAT    = c("STUDY EYE SELECTION",
                              "STUDY EYE SELECTION",
                              "",
                              "STUDY EYE SELECTION",
                              "STUDY EYE SELECTION",
                              ""),
                 SCORRES  = c("OS", "OS", "", "", "OU", ""),
                 SCDTC    = rep("2021-01-01", 6),
                 stringsAsFactors = FALSE)

check_sc_dm_eligcrit(SC=sc, DM=dm)

dm <- data.frame(USUBJID = c(1,2,3,4))
sc$SCORRES[4] = "OS"
check_sc_dm_eligcrit(SC=sc, DM=dm)

sc$SCORRES <- NULL
check_sc_dm_eligcrit(SC=sc, DM=dm)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.