check_ss_ssstat_ssorres: Check for non-missing SSORRES if SSSTAT is NOT DONE

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check for non-missing SSORRES if SSSTAT is NOT DONE

Description

This check is for studies with LTFU mapped to the SS domain, check that if 'NOT DONE' (Unable to Contact), then there should not be a response (SSORRES)

Usage

check_ss_ssstat_ssorres(SS, preproc = identity, ...)

Arguments

SS	Long-Term Survival Follow-Up SDTM dataset with variables USUBJID, VISIT, SSSTAT, SSDTC, SSORRES, SSSPID (optional)
preproc	An optional company specific preprocessing script
...	Other arguments passed to methods

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Sara Bodach

Examples

SS <- data.frame(
STUDYID = 1,
USUBJID = c(rep(1,6),rep(2,6)),
SSSTRESC = c("ALIVE", "DEAD", "ALIVE", "", "", "U"),
SSORRES = c("ALIVE", "DEAD", "ALIVE", "", "", "U"),
VISIT = rep(c("SURVIVAL FOLLOW UP 3 MONTHS"),6),
SSSTAT = rep(c("","NOT DONE"),6),
SSDTC = "2016-01-01",
SSSPID = "",
stringsAsFactors = FALSE
)

check_ss_ssstat_ssorres(SS)

SS$SSORRES[2]=NA
check_ss_ssstat_ssorres(SS)

SS$SSSPID="FORMNAME-R:5/L:5XXXX"
check_ss_ssstat_ssorres(SS,preproc=roche_derive_rave_row)

SS$SSORRES[6]=NA
SS$SSORRES[8]=""
SS$SSORRES[12]=NA
check_ss_ssstat_ssorres(SS)

SS$SSORRES=NULL
check_ss_ssstat_ssorres(SS)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.