check_tr_trdtc_across_visit: Check TR Longest Diameter Records where the same date occurs...

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Check TR Longest Diameter Records where the same date occurs across multiple visits

Description

This check identifies records where the same date TRDTC occurs across multiple visits for Longest Diameter measurements (TRTESTCD is "LDIAM"). Only applies to assessments by investigator, selected based on uppercased TREVAL = "INVESTIGATOR" or missing or TREVAL variable does not exist.

Usage

check_tr_trdtc_across_visit(TR, preproc = identity, ...)

Arguments

TR	Tumor Result SDTM dataset with variables USUBJID, TRDTC, TRTESTCD, VISIT, TREVAL (optional)
preproc	An optional company specific preprocessing script
...	Other arguments passed to methods

Value

boolean value if check failed or passed with 'msg' attribute if the test failed

Author(s)

Will Harris

Examples

TR <- data.frame(
USUBJID = 1,
TRDTC = c(rep("2016-01-01",3), rep("2016-06-01",5), rep("2016-06-24",2)),
VISIT = c(rep("C1D1",3), rep("C1D2",3), rep("C2D1",4)),
TRTESTCD = c(rep("LDIAM",7),rep("SAXIS",3)),
TRSPID = "FORMNAME-R:13/L:13XXXX",
stringsAsFactors=FALSE)

check_tr_trdtc_across_visit(TR)
check_tr_trdtc_across_visit(TR, preproc=roche_derive_rave_row)

TR2 <- TR
TR2$TRSPID[4:5] <- c("FORMNAME2-R:5/L:13XXXX", "FORMNAME3-R:0/L:13XXXX")

check_tr_trdtc_across_visit(TR2)
check_tr_trdtc_across_visit(TR2, preproc=roche_derive_rave_row)

# missing optional variable
TR3 <- TR
TR3$TRSPID <- NULL

check_tr_trdtc_across_visit(TR3)
check_tr_trdtc_across_visit(TR3, preproc=roche_derive_rave_row)

# missing required variable
TR4 <- TR
TR4$TRTESTCD <- NULL

check_tr_trdtc_across_visit(TR4)
check_tr_trdtc_across_visit(TR4, preproc=roche_derive_rave_row)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.