create_R_script: Create .R file with sdtmchecks function calls

In sdtmchecks: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets

Create .R file with sdtmchecks function calls

Description

Function that uses sdtmchecksmeta as input and creates .R file with function calls

Usage

create_R_script(
  metads = sdtmchecksmeta,
  file = "sdtmchecks_run_all.R",
  verbose = TRUE
)

Arguments

metads	sdtmchecksmeta file
file	filename and/or path to save to
verbose	Print information to console

Value

R script with user specified sdtmchecks based on sdtmchecksmeta file

Author(s)

Monarch Shah

See Also

Reporting-related utility functions convert_var_to_ascii(), truncate_var_strings()

Examples

# All checks are output to a file
fileName <- file.path(tempdir(), "run_all_checks.R")
create_R_script(file = fileName)

# Only include selected checks
fileName <- file.path(tempdir(), "run_some_checks.R")
mymetads = sdtmchecksmeta[sdtmchecksmeta$category == "ALL" & sdtmchecksmeta$priority == "High",]
create_R_script(metads = mymetads, file = fileName)

# Roche specific function calls
fileName <- file.path(tempdir(), "run_all_checks_roche.R")
mymetads = sdtmchecksmeta
mymetads$fxn_in=mymetads$fxn_in_roche
create_R_script(metads = mymetads, file = fileName)

sdtmchecks documentation built on Sept. 11, 2024, 9:34 p.m.