season: Seasonal analysis of health data
Version 0.3-5

Routines for the seasonal analysis of health data, including regression models, time-stratified case-crossover, plotting functions and residual checks. Thanks to Yuming Guo for checking the case-crossover code.

Browse man pages Browse package API and functions Browse package files

AuthorAdrian Barnett and Peter Baker
Date of publication2014-12-16 10:42:07
MaintainerAdrian Barnett <a.barnett@qut.edu.au>
LicenseGPL (>= 3)
Version0.3-5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("season")

Man pages

aaft: Amplitude Adjusted Fourier Transform (AAFT)
AFL: Australian Football League (AFL) players' birthdays for the...
casecross: Case-crossover analysis to control for seasonality
ciPhase: Mean and confidence interval for circular phase
cipolygon-internal: Function to draw CI polygon
cosinor: Cosinor regression model for detecting seasonality in yearly...
createAdj: Creates an adjacency matrix
CVD: Cardiovascular deaths in Los Angeles, 1987-2000
CVDdaily: Daily cardiovascular deaths in Los Angeles, 1987-2000
exercise: Exercise data from Queensland, 2005-2007
flagleap-internal: Count the number of days in the month
indoor: Indoor temperature data
invyrfraction: Inverse fraction of the year
kalfil-internal: Forward and backward sweep of the Kalman filter
monthglm: Fit a GLM with month
monthmean: Monthly means
nochars-internal: Remove letters and characters from a string
nonlintest: Test of non-linearity of a time series
nscosinor: Non-stationary cosinor
nscosinor.initial-internal: Initial values for non-stationary cosinor. For internal use...
peri: Periodogram
phasecalc: Phase from cosinor estimates
plotCircle: Circular plot
plotCircular: Circular plot using segments
plot.Cosinor: Plot the results of a cosinor
plotMonth: Plot results by month
plot.monthglm: Plot of monthly estimates
plot.Monthmean: Plot of monthly mean estimates
plot.nonlintest: Plot the results of the non-linear test
plot.nsCosinor: Plot the results of a Non-stationary cosinor
print.casecross: Print the results of a case-crossover model
print.Cosinor: Print the results of a cosinor
print.Monthmean: Print the results from monthmean
print.nonlintest: Print the results of the non-linear test
print.nsCosinor: Print the results of a Non-stationary cosinor
rinvgamma-internal: Random inverse gamma distribution
schz: Schizophrenia births in Australia, 1930-1971
season-internal: Internal Season Functions
season-package: Tools for uncovering and estimating seasonal patterns.
seasrescheck: Seasonal residual checks
sinusoid: Plot a sinusoid
stillbirth: Stillbirths in Queensland, 1998-2000
summary.casecross: Summary of the results of a case-crossover model
summary.Cosinor: Summary for a cosinor
summary.monthglm: Summary for a monthglm
summary.nsCosinor: Summary for a Non-stationary cosinor
third: Third-order moment
wtest: Walter and Elwood's test of seasonality
yrfraction: Fraction of the year

Functions

AFL Man page
CVD Man page
CVDdaily Man page
Monthmean Man page
aaft Man page Source code
casecross Man page Man page Man page Source code
ciPhase Man page Source code
cipolygon Man page Man page Source code
cosinor Man page Man page Man page Source code
createAdj Man page Source code
exercise Man page
flagleap Man page Man page Source code
indoor Man page
invyrfraction Man page Source code
kalfil Man page Man page
monthglm Man page Man page Man page Source code
monthmean Man page Source code
nochars Man page Man page Source code
nonlintest Man page Source code
nscosinor Man page Man page Man page Man page
nscosinor.initial Man page Source code
peri Man page
phasecalc Man page Source code
plot.Cosinor Man page Source code
plot.Monthmean Man page Source code
plot.monthglm Man page Source code
plot.nonlintest Man page Source code
plot.nsCosinor Man page Man page Source code
plot.nsCosinor.chains Man page
plot.nsCosinor.residuals Man page
plotCircle Man page Source code
plotCircular Man page Source code
plotMonth Man page Source code
print.Cosinor Man page Source code
print.Monthmean Man page Source code
print.casecross Man page Source code
print.monthglm Man page Source code
print.nonlintest Man page Source code
print.nsCosinor Man page Man page Source code
print.summary.Cosinor Man page Source code
print.summary.monthglm Man page Source code
print.summary.nsCosinor Man page Source code
rinvgamma Man page Man page Source code
schz Man page
season Man page
season-package Man page
seasrescheck Man page Source code
sinusoid Man page Source code
stillbirth Man page
summary.Cosinor Man page Source code
summary.casecross Man page Source code
summary.monthglm Man page Source code
summary.nsCosinor Man page Man page Source code
third Man page Source code
wtest Man page Source code
yrfraction Man page Source code

Files

inst
inst/CITATION
NAMESPACE
data
data/schz.RData
data/CVDdaily.RData
data/CVD.RData
data/exercise.RData
data/AFL.RData
data/stillbirth.RData
data/indoor.RData
R
R/summary.nsCosinor.R
R/kalfil.R
R/ciPhase.R
R/seasrescheck.R
R/flagleap.R
R/nscosinor.R
R/aaft.R
R/phasecalc.R
R/plotCircle.R
R/monthglm.R
R/print.Monthmean.R
R/print.summary.Cosinor.R
R/print.casecross.R
R/nonlintest.R
R/print.nsCosinor.R
R/yrfraction.R
R/nscosinor.initial.R
R/invyrfraction.R
R/plot.nsCosinor.R
R/summary.casecross.R
R/cosinor.R
R/peri.R
R/summary.Cosinor.R
R/rinvgamma.R
R/nochars.R
R/plot.Monthmean.R
R/third.R
R/monthmean.R
R/plot.monthglm.R
R/wtest.R
R/plotMonth.R
R/plot.nonlintest.R
R/print.Cosinor.R
R/sinusoid.R
R/print.monthglm.R
R/cipolygon.R
R/summary.monthglm.R
R/print.summary.monthglm.R
R/createAdj.R
R/print.nonlintest.R
R/print.summary.nsCosinor.R
R/plotCircular.R
R/casecross.R
R/plot.Cosinor.R
MD5
DESCRIPTION
man
man/wtest.Rd
man/nscosinor.initial-internal.Rd
man/print.nsCosinor.Rd
man/CVDdaily.Rd
man/kalfil-internal.Rd
man/summary.casecross.Rd
man/peri.Rd
man/monthmean.Rd
man/third.Rd
man/print.Cosinor.Rd
man/ciPhase.Rd
man/yrfraction.Rd
man/plot.Monthmean.Rd
man/plotCircle.Rd
man/rinvgamma-internal.Rd
man/plotMonth.Rd
man/summary.nsCosinor.Rd
man/plot.monthglm.Rd
man/AFL.Rd
man/schz.Rd
man/print.casecross.Rd
man/plot.Cosinor.Rd
man/invyrfraction.Rd
man/phasecalc.Rd
man/plot.nsCosinor.Rd
man/summary.monthglm.Rd
man/stillbirth.Rd
man/createAdj.Rd
man/nochars-internal.Rd
man/monthglm.Rd
man/cipolygon-internal.Rd
man/CVD.Rd
man/seasrescheck.Rd
man/indoor.Rd
man/flagleap-internal.Rd
man/casecross.Rd
man/nonlintest.Rd
man/season-internal.Rd
man/season-package.Rd
man/summary.Cosinor.Rd
man/plot.nonlintest.Rd
man/print.nonlintest.Rd
man/plotCircular.Rd
man/print.Monthmean.Rd
man/exercise.Rd
man/sinusoid.Rd
man/aaft.Rd
man/nscosinor.Rd
man/cosinor.Rd
season documentation built on May 19, 2017, 10:16 p.m.