seedy: Simulation of Evolutionary and Epidemiological Dynamics

Suite of functions for the simulation, visualisation and analysis of bacterial evolution within- and between-host.

Install the latest version of this package by entering the following in R:
install.packages("seedy")
AuthorColin Worby
Date of publication2015-11-06 23:58:19
MaintainerColin Worby <cworby@hsph.harvard.edu>
LicenseGPL-3
Version1.3

View on CRAN

Functions

ancestors Man page
deepseq Man page
deepseqmat Man page
diversity.range Man page
estcoaltime Man page
expsnps Man page
flat Man page
gd Man page
hump Man page
librtoDNA Man page
meansnps Man page
networkmat Man page
outbreak Man page
plotdistmat Man page
plotdiversity Man page
plotnetwork Man page
plotobservedsnps Man page
plotoutbreak Man page
plotsnpfreq Man page
seedy Man page
seedy-package Man page
sharedvariants Man page
simfixoutbreak Man page
simulateoutbreak Man page
simulatepopulation Man page
transmission Man page
transroutes Man page
withinhost Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.