Description Usage Arguments Details Value Examples
Generates a matrix of polymorphism frequencies
1 | deepseqmat(X)
|
X |
Simulated complete genomic sampling data from the |
The argument full=TRUE
must be passed to simulateoutbreak
or simulatepopulation
in order for complete genomic data to be generated for each sample. Data of this format can be passed to this function.
Returns a matrix, each row represents a polymorphic site, each column a sample. Frequencies of the mutant type (relative to the initial strain) are reported.
1 2 | data(deepseq)
W <- deepseqmat(deepseq)
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