deepseq: Deep-sequenced bacterial samples
In seedy: Simulation of Evolutionary and Epidemiological Dynamics
Description
Usage
Format
Examples
Description
Simulated deep-sequence samples within a host. Equilibrium population 10000, mutation rate 0.001 per site per generation, genome length 100kb, sampled every 1000 generations until 25000.
Usage
1
Format
Deep-sequenced samples were taken at 50 time points.
Examples
1
2
3
4
data(deepseq)
D <- plotdiversity(deepseq, sample.times=(1:50)*1000, xlab="Time", ylab="Expected pairwise SNPs")
seedy documentation built on May 29, 2017, 10:58 a.m.
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Description Usage Format Examples
Description
Simulated deep-sequence samples within a host. Equilibrium population 10000, mutation rate 0.001 per site per generation, genome length 100kb, sampled every 1000 generations until 25000.
Usage
1 |
Format
Deep-sequenced samples were taken at 50 time points.
Examples
1 2 3 4 | data(deepseq)
D <- plotdiversity(deepseq, sample.times=(1:50)*1000, xlab="Time", ylab="Expected pairwise SNPs")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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