withinhost: Within-host genomic data
In seedy: Simulation of Evolutionary and Epidemiological Dynamics
Description
Usage
Format
Examples
Description
Simulated within-host bacterial genomic samples.
Usage
1
Format
Two bacterial samples were taken every 2000 generations up to time 10000.
Examples
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data(withinhost)
Gmat <- gd(withinhost$obs.strain, withinhost$libr, withinhost$nuc,
withinhost$librstrains)
colvec <- rainbow(1200)[1:1000] # Color palette
coltext <- rep("black", length(colvec)) # Corresponding text colors
coltext[680:970] <- "white" # White text for darker background colours
plotdistmat(Gmat, colvec, coltext, pos="bottomleft", labels=NULL, numbers=TRUE)
seedy documentation built on May 29, 2017, 10:58 a.m.
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Description Usage Format Examples
Description
Simulated within-host bacterial genomic samples.
Usage
1 |
Format
Two bacterial samples were taken every 2000 generations up to time 10000.
Examples
1 2 3 4 5 6 7 8 9 10 | data(withinhost)
Gmat <- gd(withinhost$obs.strain, withinhost$libr, withinhost$nuc,
withinhost$librstrains)
colvec <- rainbow(1200)[1:1000] # Color palette
coltext <- rep("black", length(colvec)) # Corresponding text colors
coltext[680:970] <- "white" # White text for darker background colours
plotdistmat(Gmat, colvec, coltext, pos="bottomleft", labels=NULL, numbers=TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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