sharedvariants: Shared variants matrix
In seedy: Simulation of Evolutionary and Epidemiological Dynamics

Generates a matrix of shared variant counts between each sample pair.

1	sharedvariants(deepseqmat)

deepseqmat

Deep sequence matrix generated by the deepseqmat function.

Returns a matrix in which each entry details the number of shared intermediate frequency variants between each pair of samples.

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data(deepseq)
W <- deepseqmat(deepseq)
Y <- sharedvariants(W)

seedy documentation built on May 29, 2017, 10:58 a.m.

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