sobolTIIlo: Liu and Owen Estimation of Total Interaction Indices

In sensitivity: Global Sensitivity Analysis of Model Outputs and Importance Measures

Liu and Owen Estimation of Total Interaction Indices

Description

sobolTIIlo implements the asymptotically efficient formula of Liu and Owen (2006) for the estimation of total interaction indices as described e.g. in Section 3.4 of Fruth et al. (2014). Total interaction indices (TII) are superset indices of pairs of variables, thus give the total influence of each second-order interaction. The total cost of the method is (1+N+\choose(N,2)) \times n where N is the number of indices to estimate. Asymptotic confidence intervals are provided. Via plotFG (which uses functions of the package igraph), the TIIs can be visualized in a so-called FANOVA graph as described in section 2.2 of Muehlenstaedt et al. (2012).

Usage

sobolTIIlo(model = NULL, X1, X2, conf = 0.95, ...)
## S3 method for class 'sobolTIIlo'
tell(x, y = NULL, ...)
## S3 method for class 'sobolTIIlo'
print(x, ...)
## S3 method for class 'sobolTIIlo'
plot(x, ylim = NULL, ...)
## S3 method for class 'sobolTIIlo'
ggplot(data, mapping = aes(), ylim = NULL, ..., environment
                 = parent.frame())
## S3 method for class 'sobolTIIlo'
plotFG(x)

Arguments

model	a function, or a model with a predict method, defining the model to analyze.
X1	the first random sample.
X2	the second random sample.
conf	the confidence level for asymptotic confidence intervals, defaults to 0.95.
x	a list of class "sobolTIIlo" storing the state of the sensitivity study (parameters, data, estimates).
data	a list of class "sobolTIIlo" storing the state of the sensitivity study (parameters, data, estimates).
y	a vector of model responses.
mapping	Default list of aesthetic mappings to use for plot. If not specified, must be supplied in each layer added to the plot.
environment	[Deprecated] Used prior to tidy evaluation.
...	any other arguments for model which are passed unchanged each time it is called.
ylim	optional, the y limits of the plot.

Value

sobolTIIlo returns a list of class "sobolTIIlo", containing all the input arguments detailed before, plus the following components:

call	the matched call.
X	a data.frame containing the design of experiments.
y	a vector of model responses.
V	the estimation of the overall variance.
tii.unscaled	the unscaled estimations of the TIIs.
tii.scaled	the scaled estimations of the TIIs together with asymptotic confidence intervals.

Author(s)

Jana Fruth

References

R. Liu, A. B. Owen, 2006, Estimating mean dimensionality of analysis of variance decompositions, JASA, 101 (474), 712–721.

J. Fruth, O. Roustant, S. Kuhnt, 2014, Total interaction index: A variance-based sensitivity index for second-order interaction screening, J. Stat. Plan. Inference, 147, 212–223.

T. Muehlenstaedt, O. Roustant, L. Carraro, S. Kuhnt, 2012, Data-driven Kriging models based on FANOVA-decomposition, Stat. Comput., 22 (3), 723–738.

See Also

sobolTIIpf

Examples

# Test case : the Ishigami function

# The method requires 2 samples
n <- 1000
X1 <- data.frame(matrix(runif(3 * n, -pi, pi), nrow = n))
X2 <- data.frame(matrix(runif(3 * n, -pi, pi), nrow = n))

# sensitivity analysis (the true values of the scaled TIIs are 0, 0.244, 0)
x <- sobolTIIlo(model = ishigami.fun, X1 = X1, X2 = X2)
print(x)

# plot of tiis and FANOVA graph
plot(x)

library(ggplot2)
ggplot(x)


library(igraph)
plotFG(x)

sensitivity documentation built on Sept. 11, 2024, 9:09 p.m.